MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:53.5 nTPM
GTEx:23.0 nTPM
FANTOM5:46.6 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:49.2 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.3
2019 Male, age 18, unknown 61.0
2586 Male, age 75, left hemisphere 49.2
2666 Male, age 74, left hemisphere 46.2
2828 Female, age 72, unknown 46.0
2219 Male, age 76, both hemispheres 45.8
1827 Male, age 72, unknown 44.4
1833 Male, age 53, unknown 40.1
2411 Female, age 72, unknown 37.4
1830 Male, age 51, unknown 36.7
1870 Female, age 42, unknown 36.3
Dorsal raphe nucleus
nTPM: 38.7
1828 Male, age 53, unknown 41.8
2298 Female, age 72, unknown 41.7
2047 Male, age 72, unknown 40.9
2016 Female, age 72, unknown 35.3
2750 Male, age 76, both hemispheres 34.1
Inferior colliculus
nTPM: 44.5
1890 Male, age 53, unknown 46.7
2849 Male, age 72, unknown 44.9
2097 Female, age 72, unknown 44.1
1848 Female, age 42, unknown 42.2
Median raphe nucleus
nTPM: 44.5
2220 Male, age 76, midline 44.5
Periaquaductal grey, anterior
nTPM: 38.0
1795 Male, age 51, unknown 41.4
2502 Female, age 75, unknown 40.4
1947 Male, age 18, unknown 32.2
Periaquaductal grey, dorsal
nTPM: 41.8
2850 Male, age 76, both hemispheres 46.8
1831 Male, age 72, unknown 43.8
1840 Male, age 53, unknown 41.2
2464 Female, age 72, unknown 35.4
Periaquaductal grey, lateral
nTPM: 38.5
2140 Male, age 76, both hemispheres 42.3
2272 Male, age 74, both hemispheres 37.0
2053 Male, age 18, unknown 36.2
Pretectal area
nTPM: 53.5
1944 Female, age 72, unknown 80.7
1817 Female, age 42, unknown 79.4
1816 Male, age 51, unknown 73.2
2007 Male, age 72, unknown 68.9
1815 Male, age 53, unknown 55.6
2667 Female, age 75, unknown 48.2
2224 Female, age 72, unknown 38.9
2273 Male, age 74, both hemispheres 38.3
2316 Male, age 76, right hemisphere 37.2
2825 Male, age 18, unknown 35.5
2407 Male, age 75, both hemispheres 33.2
Red nucleus
nTPM: 40.0
2785 Male, age 18, unknown 60.8
2588 Male, age 74, left hemisphere 46.4
2725 Female, age 75, unknown 42.6
1865 Male, age 51, unknown 40.0
1821 Female, age 72, unknown 39.4
2503 Female, age 72, unknown 39.1
2227 Male, age 72, unknown 37.7
1904 Male, age 53, unknown 37.0
1954 Female, age 42, unknown 35.1
2584 Male, age 75, left hemisphere 34.8
2823 Male, age 76, right hemisphere 34.6
2769 Male, age 72, unknown 33.0
Substantia nigra
nTPM: 45.3
1889 Female, age 72, unknown 64.6
2409 Female, age 72, unknown 52.2
2665 Male, age 74, both hemispheres 48.6
1941 Male, age 53, unknown 48.2
2590 Female, age 75, unknown 42.9
1916 Female, age 42, unknown 41.4
2583 Male, age 75, right hemisphere 40.3
1851 Male, age 51, unknown 38.6
2699 Male, age 18, unknown 38.4
2241 Male, age 72, unknown 38.1
Superior colliculus
nTPM: 44.6
2087 Female, age 72, unknown 62.1
1796 Male, age 53, unknown 45.1
2664 Male, age 75, both hemispheres 45.0
1913 Female, age 42, unknown 44.3
2587 Male, age 74, left hemisphere 43.7
2261 Male, age 18, unknown 42.6
1895 Male, age 76, right hemisphere 42.2
2668 Female, age 75, unknown 42.2
1995 Male, age 72, unknown 41.9
1839 Male, age 51, unknown 37.3
Ventral tegmental area
nTPM: 38.9
2410 Female, age 72, unknown 46.3
1942 Male, age 51, unknown 39.5
1915 Female, age 42, unknown 39.4
2218 Male, age 76, both hemispheres 39.3
2223 Female, age 72, unknown 35.6
2021 Male, age 53, unknown 33.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 38.0
Min nTPM: 16.2
Std nTPM: 3.6
Median nTPM: 22.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 33.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 33.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 32.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 31.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 30.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 29.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 29.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 28.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.6
FF:10158-103A5 76 years, female 46.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.4
Samples: 4

Max nTPM: 47.6
Min nTPM: 30.7
Sample A Female 47.6
Sample B Female 30.7
Sample C Male 41.0
Sample D Male 42.1
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 56.4
Min nTPM: 37.6
Sample A Female 56.4
Sample B Female 40.5
Sample C Male 49.3
Sample D Male 37.6
Periaqueductal gray
nTPM: 36.0
Samples: 3

Max nTPM: 38.0
Min nTPM: 34.8
Sample B Female 35.3
Sample C Male 38.0
Sample D Male 34.8
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 50.5
Min nTPM: 30.0
Sample A Female 47.5
Sample B Female 30.0
Sample C Male 50.5
Sample D Male 43.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.2
Samples: 4

Max nTPM: 50.4
Min nTPM: 46.5
Sample A Male 46.5
Sample B Male 50.4
Sample C Female 49.6
Sample D Female 50.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
532701 Antisense, RP_040825_01_E12, Mouse strain C57BL/6J (56 days, male) 6.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org