MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.2 nTPM
HPA Brain:130.5 nTPM
GTEx:91.2 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:78.4 nTPM
Mouse:166.4 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 130.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.4
2666 Male, age 74, left hemisphere 136.5
2586 Male, age 75, left hemisphere 130.8
2219 Male, age 76, both hemispheres 118.0
2019 Male, age 18, unknown 114.4
1827 Male, age 72, unknown 113.9
2411 Female, age 72, unknown 113.0
1870 Female, age 42, unknown 109.9
2828 Female, age 72, unknown 104.0
1833 Male, age 53, unknown 97.0
1830 Male, age 51, unknown 96.4
Dorsal raphe nucleus
nTPM: 111.6
2750 Male, age 76, both hemispheres 118.8
1828 Male, age 53, unknown 118.5
2298 Female, age 72, unknown 116.3
2047 Male, age 72, unknown 113.9
2016 Female, age 72, unknown 90.6
Inferior colliculus
nTPM: 109.7
2849 Male, age 72, unknown 116.2
1890 Male, age 53, unknown 110.4
2097 Female, age 72, unknown 107.1
1848 Female, age 42, unknown 105.1
Median raphe nucleus
nTPM: 130.5
2220 Male, age 76, midline 130.5
Periaquaductal grey, anterior
nTPM: 126.0
2502 Female, age 75, unknown 128.8
1947 Male, age 18, unknown 126.3
1795 Male, age 51, unknown 123.0
Periaquaductal grey, dorsal
nTPM: 103.8
2850 Male, age 76, both hemispheres 115.5
1840 Male, age 53, unknown 114.6
2464 Female, age 72, unknown 96.9
1831 Male, age 72, unknown 88.0
Periaquaductal grey, lateral
nTPM: 96.4
2140 Male, age 76, both hemispheres 100.2
2272 Male, age 74, both hemispheres 96.3
2053 Male, age 18, unknown 92.6
Pretectal area
nTPM: 116.2
1816 Male, age 51, unknown 142.4
1817 Female, age 42, unknown 140.9
2007 Male, age 72, unknown 140.2
1944 Female, age 72, unknown 133.0
1815 Male, age 53, unknown 122.2
2667 Female, age 75, unknown 117.8
2224 Female, age 72, unknown 110.0
2825 Male, age 18, unknown 101.8
2316 Male, age 76, right hemisphere 97.8
2407 Male, age 75, both hemispheres 87.0
2273 Male, age 74, both hemispheres 84.9
Red nucleus
nTPM: 102.2
2785 Male, age 18, unknown 116.6
2584 Male, age 75, left hemisphere 112.9
2725 Female, age 75, unknown 112.7
2769 Male, age 72, unknown 107.3
1821 Female, age 72, unknown 106.0
2503 Female, age 72, unknown 103.4
2227 Male, age 72, unknown 102.2
1954 Female, age 42, unknown 97.5
1904 Male, age 53, unknown 96.7
2588 Male, age 74, left hemisphere 94.9
1865 Male, age 51, unknown 94.8
2823 Male, age 76, right hemisphere 81.7
Substantia nigra
nTPM: 125.1
1916 Female, age 42, unknown 170.1
1851 Male, age 51, unknown 142.3
2665 Male, age 74, both hemispheres 138.6
1889 Female, age 72, unknown 128.3
1941 Male, age 53, unknown 127.4
2241 Male, age 72, unknown 127.0
2699 Male, age 18, unknown 113.7
2409 Female, age 72, unknown 108.5
2583 Male, age 75, right hemisphere 105.0
2590 Female, age 75, unknown 89.9
Superior colliculus
nTPM: 107.3
2668 Female, age 75, unknown 125.3
1796 Male, age 53, unknown 122.1
2087 Female, age 72, unknown 118.2
2261 Male, age 18, unknown 115.8
2587 Male, age 74, left hemisphere 106.0
1895 Male, age 76, right hemisphere 103.6
2664 Male, age 75, both hemispheres 101.7
1839 Male, age 51, unknown 100.3
1913 Female, age 42, unknown 94.5
1995 Male, age 72, unknown 85.0
Ventral tegmental area
nTPM: 121.0
2218 Male, age 76, both hemispheres 132.9
1915 Female, age 42, unknown 132.6
2410 Female, age 72, unknown 128.8
2223 Female, age 72, unknown 120.0
1942 Male, age 51, unknown 114.4
2021 Male, age 53, unknown 97.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.2
Samples: 139

Max nTPM: 164.5
Min nTPM: 50.0
Std nTPM: 24.5
Median nTPM: 85.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 164.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 159.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 152.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 141.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 140.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 137.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 136.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 135.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 135.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 133.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 133.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 78.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.7
Samples: 4

Max nTPM: 98.3
Min nTPM: 50.4
Sample A Female 98.3
Sample B Female 58.4
Sample C Male 91.5
Sample D Male 50.4
Midbrain
nTPM: 78.3
Samples: 4

Max nTPM: 84.4
Min nTPM: 63.7
Sample A Female 63.7
Sample B Female 80.9
Sample C Male 84.2
Sample D Male 84.4
Periaqueductal gray
nTPM: 65.9
Samples: 3

Max nTPM: 76.7
Min nTPM: 53.7
Sample B Female 67.4
Sample C Male 76.7
Sample D Male 53.7
Superior colliculi
nTPM: 78.4
Samples: 4

Max nTPM: 101.9
Min nTPM: 57.6
Sample A Female 101.9
Sample B Female 57.6
Sample C Male 80.0
Sample D Male 74.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 166.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 166.4
Samples: 4

Max nTPM: 188.3
Min nTPM: 146.7
Sample A Male 146.7
Sample B Male 188.3
Sample C Female 154.9
Sample D Female 175.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
69028246 Antisense, RP_050315_01_G07, Mouse strain C57BL/6J (56 days, male) 3.6

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