MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA Brain:157.9 nTPM
GTEx:73.5 nTPM
FANTOM5:372.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 157.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.7
2586 Male, age 75, left hemisphere 184.0
2666 Male, age 74, left hemisphere 160.0
2019 Male, age 18, unknown 154.7
2828 Female, age 72, unknown 140.2
1830 Male, age 51, unknown 133.7
2411 Female, age 72, unknown 127.6
1833 Male, age 53, unknown 123.7
1870 Female, age 42, unknown 118.2
1827 Male, age 72, unknown 114.4
2219 Male, age 76, both hemispheres 81.0
Dorsal raphe nucleus
nTPM: 104.2
2750 Male, age 76, both hemispheres 142.6
1828 Male, age 53, unknown 110.5
2016 Female, age 72, unknown 110.2
2047 Male, age 72, unknown 83.8
2298 Female, age 72, unknown 73.8
Inferior colliculus
nTPM: 103.8
1890 Male, age 53, unknown 110.6
2097 Female, age 72, unknown 105.4
1848 Female, age 42, unknown 104.9
2849 Male, age 72, unknown 94.2
Median raphe nucleus
nTPM: 74.9
2220 Male, age 76, midline 74.9
Periaquaductal grey, anterior
nTPM: 99.6
2502 Female, age 75, unknown 106.2
1947 Male, age 18, unknown 98.4
1795 Male, age 51, unknown 94.1
Periaquaductal grey, dorsal
nTPM: 86.6
1831 Male, age 72, unknown 110.9
2464 Female, age 72, unknown 98.8
1840 Male, age 53, unknown 77.1
2850 Male, age 76, both hemispheres 59.6
Periaquaductal grey, lateral
nTPM: 82.9
2053 Male, age 18, unknown 101.9
2272 Male, age 74, both hemispheres 80.1
2140 Male, age 76, both hemispheres 66.9
Pretectal area
nTPM: 115.0
1815 Male, age 53, unknown 143.2
2007 Male, age 72, unknown 140.4
1817 Female, age 42, unknown 136.6
2316 Male, age 76, right hemisphere 134.6
2407 Male, age 75, both hemispheres 125.5
1816 Male, age 51, unknown 118.3
1944 Female, age 72, unknown 111.3
2667 Female, age 75, unknown 106.4
2825 Male, age 18, unknown 93.4
2273 Male, age 74, both hemispheres 85.5
2224 Female, age 72, unknown 69.9
Red nucleus
nTPM: 157.9
2823 Male, age 76, right hemisphere 185.9
2588 Male, age 74, left hemisphere 175.5
2785 Male, age 18, unknown 167.2
1821 Female, age 72, unknown 165.5
2584 Male, age 75, left hemisphere 165.3
2227 Male, age 72, unknown 156.8
1904 Male, age 53, unknown 156.5
1865 Male, age 51, unknown 156.3
2769 Male, age 72, unknown 152.3
2503 Female, age 72, unknown 151.9
1954 Female, age 42, unknown 144.9
2725 Female, age 75, unknown 116.6
Substantia nigra
nTPM: 113.9
2583 Male, age 75, right hemisphere 134.2
1851 Male, age 51, unknown 127.1
1889 Female, age 72, unknown 126.5
2665 Male, age 74, both hemispheres 113.1
2590 Female, age 75, unknown 112.9
1916 Female, age 42, unknown 112.6
2409 Female, age 72, unknown 112.6
2699 Male, age 18, unknown 106.4
1941 Male, age 53, unknown 101.0
2241 Male, age 72, unknown 92.7
Superior colliculus
nTPM: 135.6
2668 Female, age 75, unknown 179.1
2664 Male, age 75, both hemispheres 158.7
1995 Male, age 72, unknown 156.6
1913 Female, age 42, unknown 140.0
1895 Male, age 76, right hemisphere 137.9
1839 Male, age 51, unknown 127.6
2087 Female, age 72, unknown 118.5
2587 Male, age 74, left hemisphere 117.0
1796 Male, age 53, unknown 110.5
2261 Male, age 18, unknown 110.5
Ventral tegmental area
nTPM: 107.7
2410 Female, age 72, unknown 134.3
2021 Male, age 53, unknown 113.8
2223 Female, age 72, unknown 106.7
1915 Female, age 42, unknown 105.3
1942 Male, age 51, unknown 98.7
2218 Male, age 76, both hemispheres 87.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.5
Samples: 139

Max nTPM: 186.4
Min nTPM: 40.1
Std nTPM: 26.2
Median nTPM: 67.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 186.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 166.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 159.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 147.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 146.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 137.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 129.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 124.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 113.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 111.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 372.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 372.0
FF:10158-103A5 76 years, female 372.0

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