MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:59.7 nTPM
GTEx:11.0 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:16.1 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.0
2219 Male, age 76, both hemispheres 51.2
2411 Female, age 72, unknown 35.0
1827 Male, age 72, unknown 34.3
1870 Female, age 42, unknown 33.4
1833 Male, age 53, unknown 30.9
2586 Male, age 75, left hemisphere 29.1
1830 Male, age 51, unknown 28.8
2666 Male, age 74, left hemisphere 27.9
2828 Female, age 72, unknown 25.0
2019 Male, age 18, unknown 23.8
Dorsal raphe nucleus
nTPM: 33.3
2298 Female, age 72, unknown 42.5
2047 Male, age 72, unknown 33.8
2016 Female, age 72, unknown 32.4
2750 Male, age 76, both hemispheres 30.8
1828 Male, age 53, unknown 27.0
Inferior colliculus
nTPM: 32.5
2849 Male, age 72, unknown 37.9
1848 Female, age 42, unknown 33.4
1890 Male, age 53, unknown 30.6
2097 Female, age 72, unknown 28.1
Median raphe nucleus
nTPM: 59.7
2220 Male, age 76, midline 59.7
Periaquaductal grey, anterior
nTPM: 30.9
1947 Male, age 18, unknown 35.0
1795 Male, age 51, unknown 32.8
2502 Female, age 75, unknown 24.9
Periaquaductal grey, dorsal
nTPM: 35.6
1840 Male, age 53, unknown 40.8
1831 Male, age 72, unknown 34.5
2464 Female, age 72, unknown 34.5
2850 Male, age 76, both hemispheres 32.5
Periaquaductal grey, lateral
nTPM: 36.1
2053 Male, age 18, unknown 40.8
2140 Male, age 76, both hemispheres 35.0
2272 Male, age 74, both hemispheres 32.6
Pretectal area
nTPM: 30.1
2224 Female, age 72, unknown 39.8
2825 Male, age 18, unknown 38.1
2273 Male, age 74, both hemispheres 30.6
1817 Female, age 42, unknown 29.2
2407 Male, age 75, both hemispheres 29.1
1816 Male, age 51, unknown 29.0
2316 Male, age 76, right hemisphere 28.5
1815 Male, age 53, unknown 28.0
1944 Female, age 72, unknown 27.3
2007 Male, age 72, unknown 26.4
2667 Female, age 75, unknown 24.8
Red nucleus
nTPM: 25.6
2584 Male, age 75, left hemisphere 37.3
2588 Male, age 74, left hemisphere 30.3
2725 Female, age 75, unknown 29.4
1954 Female, age 42, unknown 25.9
2769 Male, age 72, unknown 25.6
2503 Female, age 72, unknown 25.2
2227 Male, age 72, unknown 24.4
2785 Male, age 18, unknown 24.2
1821 Female, age 72, unknown 23.4
1904 Male, age 53, unknown 22.7
1865 Male, age 51, unknown 21.8
2823 Male, age 76, right hemisphere 16.6
Substantia nigra
nTPM: 32.1
2590 Female, age 75, unknown 49.3
2583 Male, age 75, right hemisphere 38.2
2241 Male, age 72, unknown 33.6
2409 Female, age 72, unknown 32.1
1916 Female, age 42, unknown 29.7
2665 Male, age 74, both hemispheres 29.1
1889 Female, age 72, unknown 28.3
1941 Male, age 53, unknown 28.3
1851 Male, age 51, unknown 27.7
2699 Male, age 18, unknown 25.0
Superior colliculus
nTPM: 29.9
1796 Male, age 53, unknown 38.1
2664 Male, age 75, both hemispheres 36.1
1839 Male, age 51, unknown 35.4
2261 Male, age 18, unknown 30.3
1895 Male, age 76, right hemisphere 29.9
2587 Male, age 74, left hemisphere 28.9
2087 Female, age 72, unknown 26.3
1913 Female, age 42, unknown 25.3
1995 Male, age 72, unknown 24.6
2668 Female, age 75, unknown 23.8
Ventral tegmental area
nTPM: 30.0
2021 Male, age 53, unknown 34.2
1942 Male, age 51, unknown 33.7
1915 Female, age 42, unknown 32.7
2410 Female, age 72, unknown 29.4
2223 Female, age 72, unknown 27.8
2218 Male, age 76, both hemispheres 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 99.0
Min nTPM: 4.4
Std nTPM: 8.8
Median nTPM: 9.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 99.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 36.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 32.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 29.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 22.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 19.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 18.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 18.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 17.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 17.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 14.0
Min nTPM: 13.5
Sample A Female 13.8
Sample B Female 14.0
Sample C Male 13.5
Sample D Male 13.7
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.4
Sample A Female 13.7
Sample B Female 15.5
Sample C Male 13.4
Sample D Male 17.4
Periaqueductal gray
nTPM: 16.1
Samples: 3

Max nTPM: 16.5
Min nTPM: 15.5
Sample B Female 16.5
Sample C Male 15.5
Sample D Male 16.4
Superior colliculi
nTPM: 14.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.5
Sample A Female 13.6
Sample B Female 15.5
Sample C Male 13.5
Sample D Male 15.2

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