MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:43.6 nTPM
GTEx:8.9 nTPM
FANTOM5:12.7 Scaled Tags Per Million
Pig:34.3 nTPM
Mouse:18.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
1827 Male, age 72, unknown 39.3
2411 Female, age 72, unknown 37.6
1870 Female, age 42, unknown 35.3
2586 Male, age 75, left hemisphere 33.9
2019 Male, age 18, unknown 31.2
1833 Male, age 53, unknown 30.8
2666 Male, age 74, left hemisphere 29.6
2828 Female, age 72, unknown 29.6
2219 Male, age 76, both hemispheres 29.5
1830 Male, age 51, unknown 28.3
Dorsal raphe nucleus
nTPM: 35.6
2298 Female, age 72, unknown 44.1
2750 Male, age 76, both hemispheres 35.9
2047 Male, age 72, unknown 35.1
1828 Male, age 53, unknown 32.3
2016 Female, age 72, unknown 30.4
Inferior colliculus
nTPM: 33.7
2097 Female, age 72, unknown 39.3
1848 Female, age 42, unknown 32.2
2849 Male, age 72, unknown 32.2
1890 Male, age 53, unknown 30.9
Median raphe nucleus
nTPM: 43.6
2220 Male, age 76, midline 43.6
Periaquaductal grey, anterior
nTPM: 38.8
1947 Male, age 18, unknown 41.3
2502 Female, age 75, unknown 38.7
1795 Male, age 51, unknown 36.5
Periaquaductal grey, dorsal
nTPM: 36.2
2850 Male, age 76, both hemispheres 40.7
1840 Male, age 53, unknown 40.6
1831 Male, age 72, unknown 33.0
2464 Female, age 72, unknown 30.6
Periaquaductal grey, lateral
nTPM: 35.0
2140 Male, age 76, both hemispheres 38.3
2272 Male, age 74, both hemispheres 34.3
2053 Male, age 18, unknown 32.6
Pretectal area
nTPM: 38.5
1816 Male, age 51, unknown 45.7
1944 Female, age 72, unknown 42.1
2224 Female, age 72, unknown 41.6
2007 Male, age 72, unknown 41.5
1817 Female, age 42, unknown 40.4
2667 Female, age 75, unknown 39.4
1815 Male, age 53, unknown 39.2
2825 Male, age 18, unknown 36.0
2273 Male, age 74, both hemispheres 35.9
2316 Male, age 76, right hemisphere 31.8
2407 Male, age 75, both hemispheres 30.0
Red nucleus
nTPM: 29.8
1821 Female, age 72, unknown 37.1
2725 Female, age 75, unknown 33.4
1954 Female, age 42, unknown 30.7
2503 Female, age 72, unknown 30.1
2785 Male, age 18, unknown 29.7
2823 Male, age 76, right hemisphere 28.9
1904 Male, age 53, unknown 28.6
1865 Male, age 51, unknown 28.4
2227 Male, age 72, unknown 28.2
2769 Male, age 72, unknown 27.9
2584 Male, age 75, left hemisphere 27.7
2588 Male, age 74, left hemisphere 27.4
Substantia nigra
nTPM: 40.8
1916 Female, age 42, unknown 51.6
2241 Male, age 72, unknown 51.0
1941 Male, age 53, unknown 46.2
1851 Male, age 51, unknown 42.6
1889 Female, age 72, unknown 42.4
2409 Female, age 72, unknown 40.5
2699 Male, age 18, unknown 37.1
2590 Female, age 75, unknown 34.6
2665 Male, age 74, both hemispheres 32.0
2583 Male, age 75, right hemisphere 30.0
Superior colliculus
nTPM: 32.7
2261 Male, age 18, unknown 39.0
2087 Female, age 72, unknown 36.9
1796 Male, age 53, unknown 36.6
1839 Male, age 51, unknown 33.8
2587 Male, age 74, left hemisphere 33.2
2668 Female, age 75, unknown 32.6
1895 Male, age 76, right hemisphere 32.1
2664 Male, age 75, both hemispheres 30.4
1913 Female, age 42, unknown 27.8
1995 Male, age 72, unknown 24.8
Ventral tegmental area
nTPM: 37.4
2218 Male, age 76, both hemispheres 42.0
2410 Female, age 72, unknown 40.8
1915 Female, age 42, unknown 40.7
1942 Male, age 51, unknown 35.9
2223 Female, age 72, unknown 33.0
2021 Male, age 53, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 18.7
Min nTPM: 5.0
Std nTPM: 2.4
Median nTPM: 8.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 15.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 14.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 13.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 13.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 12.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 12.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.7
FF:10158-103A5 76 years, female 12.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 36.8
Min nTPM: 22.7
Sample A Female 36.5
Sample B Female 29.0
Sample C Male 36.8
Sample D Male 22.7
Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 40.4
Min nTPM: 31.7
Sample A Female 31.7
Sample B Female 33.5
Sample C Male 40.4
Sample D Male 31.7
Periaqueductal gray
nTPM: 30.9
Samples: 3

Max nTPM: 35.4
Min nTPM: 27.9
Sample B Female 29.5
Sample C Male 35.4
Sample D Male 27.9
Superior colliculi
nTPM: 31.7
Samples: 4

Max nTPM: 37.1
Min nTPM: 27.3
Sample A Female 32.2
Sample B Female 27.3
Sample C Male 37.1
Sample D Male 30.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 19.6
Min nTPM: 15.6
Sample A Male 15.6
Sample B Male 19.6
Sample C Female 19.6
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71763577 Antisense, RP_050921_02_C06, Mouse strain C57BL/6J (56 days, male) 0.1

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