MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.6 nTPM
HPA Brain:56.3 nTPM
GTEx:29.6 nTPM
FANTOM5:63.4 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:26.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.2
2411 Female, age 72, unknown 62.8
1830 Male, age 51, unknown 60.8
1833 Male, age 53, unknown 57.9
1827 Male, age 72, unknown 55.5
1870 Female, age 42, unknown 54.4
2219 Male, age 76, both hemispheres 53.5
2666 Male, age 74, left hemisphere 52.9
2019 Male, age 18, unknown 52.6
2586 Male, age 75, left hemisphere 52.3
2828 Female, age 72, unknown 49.1
Dorsal raphe nucleus
nTPM: 42.4
2750 Male, age 76, both hemispheres 50.0
1828 Male, age 53, unknown 41.0
2047 Male, age 72, unknown 40.7
2016 Female, age 72, unknown 40.2
2298 Female, age 72, unknown 39.9
Inferior colliculus
nTPM: 47.2
2849 Male, age 72, unknown 49.1
2097 Female, age 72, unknown 48.9
1890 Male, age 53, unknown 46.3
1848 Female, age 42, unknown 44.7
Median raphe nucleus
nTPM: 53.0
2220 Male, age 76, midline 53.0
Periaquaductal grey, anterior
nTPM: 51.9
1947 Male, age 18, unknown 64.4
2502 Female, age 75, unknown 47.1
1795 Male, age 51, unknown 44.2
Periaquaductal grey, dorsal
nTPM: 41.4
2464 Female, age 72, unknown 45.8
2850 Male, age 76, both hemispheres 40.9
1831 Male, age 72, unknown 39.7
1840 Male, age 53, unknown 39.2
Periaquaductal grey, lateral
nTPM: 44.6
2272 Male, age 74, both hemispheres 45.2
2053 Male, age 18, unknown 44.7
2140 Male, age 76, both hemispheres 43.8
Pretectal area
nTPM: 44.8
2407 Male, age 75, both hemispheres 63.7
2007 Male, age 72, unknown 50.1
2825 Male, age 18, unknown 48.0
2316 Male, age 76, right hemisphere 46.4
1817 Female, age 42, unknown 43.5
1815 Male, age 53, unknown 43.4
1944 Female, age 72, unknown 42.4
2273 Male, age 74, both hemispheres 41.4
2224 Female, age 72, unknown 40.9
1816 Male, age 51, unknown 38.4
2667 Female, age 75, unknown 35.1
Red nucleus
nTPM: 56.3
2584 Male, age 75, left hemisphere 62.9
1904 Male, age 53, unknown 61.7
1865 Male, age 51, unknown 60.4
2725 Female, age 75, unknown 59.4
2503 Female, age 72, unknown 58.7
2588 Male, age 74, left hemisphere 57.0
1954 Female, age 42, unknown 55.6
2769 Male, age 72, unknown 55.6
2785 Male, age 18, unknown 55.2
2227 Male, age 72, unknown 54.2
2823 Male, age 76, right hemisphere 48.5
1821 Female, age 72, unknown 46.8
Substantia nigra
nTPM: 45.2
2583 Male, age 75, right hemisphere 55.2
2590 Female, age 75, unknown 54.3
2409 Female, age 72, unknown 48.2
1851 Male, age 51, unknown 46.9
1889 Female, age 72, unknown 46.8
1941 Male, age 53, unknown 44.9
1916 Female, age 42, unknown 40.9
2241 Male, age 72, unknown 39.7
2699 Male, age 18, unknown 37.8
2665 Male, age 74, both hemispheres 37.6
Superior colliculus
nTPM: 50.5
1913 Female, age 42, unknown 55.0
1796 Male, age 53, unknown 54.4
1995 Male, age 72, unknown 54.1
2668 Female, age 75, unknown 53.8
1839 Male, age 51, unknown 52.1
2587 Male, age 74, left hemisphere 50.1
2664 Male, age 75, both hemispheres 48.6
2261 Male, age 18, unknown 46.6
2087 Female, age 72, unknown 45.6
1895 Male, age 76, right hemisphere 44.6
Ventral tegmental area
nTPM: 49.4
2223 Female, age 72, unknown 59.5
1942 Male, age 51, unknown 51.1
2410 Female, age 72, unknown 49.0
1915 Female, age 42, unknown 47.1
2218 Male, age 76, both hemispheres 45.4
2021 Male, age 53, unknown 44.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.6
Samples: 139

Max nTPM: 77.7
Min nTPM: 8.1
Std nTPM: 11.4
Median nTPM: 27.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 77.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 69.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 55.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 53.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 51.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 50.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 50.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 49.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 45.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.4
FF:10158-103A5 76 years, female 63.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.3
Samples: 4

Max nTPM: 50.9
Min nTPM: 37.3
Sample A Female 49.6
Sample B Female 39.3
Sample C Male 37.3
Sample D Male 50.9
Midbrain
nTPM: 44.7
Samples: 4

Max nTPM: 71.6
Min nTPM: 27.4
Sample A Female 71.6
Sample B Female 46.8
Sample C Male 27.4
Sample D Male 32.8
Periaqueductal gray
nTPM: 30.5
Samples: 3

Max nTPM: 36.1
Min nTPM: 27.5
Sample B Female 36.1
Sample C Male 27.5
Sample D Male 27.8
Superior colliculi
nTPM: 37.7
Samples: 4

Max nTPM: 50.9
Min nTPM: 24.8
Sample A Female 50.9
Sample B Female 24.8
Sample C Male 31.9
Sample D Male 43.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 27.1
Min nTPM: 25.4
Sample A Male 27.0
Sample B Male 27.1
Sample C Female 26.6
Sample D Female 25.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68797739 Antisense, RP_050215_01_A08, Mouse strain C57BL/6J (56 days, male) 0.3
70919866 Antisense, RP_050713_02_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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