MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:124.2 nTPM
HPA Brain:56.0 nTPM
GTEx:124.2 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:91.4 nTPM
Mouse:184.6 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
2019 Male, age 18, unknown 59.1
2411 Female, age 72, unknown 57.1
1827 Male, age 72, unknown 53.6
1870 Female, age 42, unknown 47.4
2666 Male, age 74, left hemisphere 46.2
2828 Female, age 72, unknown 46.0
2219 Male, age 76, both hemispheres 44.4
2586 Male, age 75, left hemisphere 43.2
1833 Male, age 53, unknown 38.8
1830 Male, age 51, unknown 37.4
Dorsal raphe nucleus
nTPM: 55.4
2298 Female, age 72, unknown 74.5
2750 Male, age 76, both hemispheres 54.2
1828 Male, age 53, unknown 53.3
2047 Male, age 72, unknown 52.2
2016 Female, age 72, unknown 42.7
Inferior colliculus
nTPM: 48.2
2097 Female, age 72, unknown 59.9
1890 Male, age 53, unknown 54.8
1848 Female, age 42, unknown 44.0
2849 Male, age 72, unknown 34.2
Median raphe nucleus
nTPM: 51.4
2220 Male, age 76, midline 51.4
Periaquaductal grey, anterior
nTPM: 54.9
2502 Female, age 75, unknown 56.0
1795 Male, age 51, unknown 54.5
1947 Male, age 18, unknown 54.3
Periaquaductal grey, dorsal
nTPM: 40.0
1840 Male, age 53, unknown 44.1
2464 Female, age 72, unknown 41.1
1831 Male, age 72, unknown 39.8
2850 Male, age 76, both hemispheres 34.9
Periaquaductal grey, lateral
nTPM: 44.0
2272 Male, age 74, both hemispheres 50.8
2053 Male, age 18, unknown 43.5
2140 Male, age 76, both hemispheres 37.7
Pretectal area
nTPM: 54.5
2007 Male, age 72, unknown 72.3
1816 Male, age 51, unknown 68.4
1817 Female, age 42, unknown 66.8
1944 Female, age 72, unknown 59.3
2273 Male, age 74, both hemispheres 55.2
1815 Male, age 53, unknown 54.3
2667 Female, age 75, unknown 52.2
2224 Female, age 72, unknown 51.4
2825 Male, age 18, unknown 41.9
2316 Male, age 76, right hemisphere 41.0
2407 Male, age 75, both hemispheres 36.8
Red nucleus
nTPM: 51.7
1821 Female, age 72, unknown 66.6
1954 Female, age 42, unknown 54.5
2503 Female, age 72, unknown 52.9
2785 Male, age 18, unknown 52.7
2769 Male, age 72, unknown 52.5
2227 Male, age 72, unknown 52.4
2725 Female, age 75, unknown 52.2
1904 Male, age 53, unknown 50.5
2588 Male, age 74, left hemisphere 48.5
1865 Male, age 51, unknown 47.2
2823 Male, age 76, right hemisphere 45.3
2584 Male, age 75, left hemisphere 45.0
Substantia nigra
nTPM: 56.0
1916 Female, age 42, unknown 82.3
1851 Male, age 51, unknown 73.7
1889 Female, age 72, unknown 66.5
1941 Male, age 53, unknown 55.7
2590 Female, age 75, unknown 55.3
2241 Male, age 72, unknown 53.2
2699 Male, age 18, unknown 47.6
2665 Male, age 74, both hemispheres 45.6
2409 Female, age 72, unknown 40.7
2583 Male, age 75, right hemisphere 39.3
Superior colliculus
nTPM: 48.3
2087 Female, age 72, unknown 57.5
2261 Male, age 18, unknown 55.1
1796 Male, age 53, unknown 54.9
2587 Male, age 74, left hemisphere 50.8
1895 Male, age 76, right hemisphere 47.7
2668 Female, age 75, unknown 46.6
1913 Female, age 42, unknown 44.8
1995 Male, age 72, unknown 43.8
2664 Male, age 75, both hemispheres 42.1
1839 Male, age 51, unknown 39.6
Ventral tegmental area
nTPM: 56.0
2410 Female, age 72, unknown 67.9
1915 Female, age 42, unknown 64.9
2218 Male, age 76, both hemispheres 57.3
1942 Male, age 51, unknown 53.0
2223 Female, age 72, unknown 47.2
2021 Male, age 53, unknown 45.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.2
Samples: 139

Max nTPM: 244.4
Min nTPM: 54.2
Std nTPM: 30.9
Median nTPM: 118.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 244.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 215.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 204.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 196.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 192.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 191.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 189.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 189.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 187.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 174.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 174.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.1
Samples: 4

Max nTPM: 129.9
Min nTPM: 48.7
Sample A Female 129.9
Sample B Female 55.5
Sample C Male 62.1
Sample D Male 48.7
Midbrain
nTPM: 76.4
Samples: 4

Max nTPM: 98.9
Min nTPM: 64.2
Sample A Female 98.9
Sample B Female 66.8
Sample C Male 75.5
Sample D Male 64.2
Periaqueductal gray
nTPM: 52.1
Samples: 3

Max nTPM: 61.1
Min nTPM: 44.7
Sample B Female 50.4
Sample C Male 61.1
Sample D Male 44.7
Superior colliculi
nTPM: 91.4
Samples: 4

Max nTPM: 139.3
Min nTPM: 64.7
Sample A Female 139.3
Sample B Female 69.3
Sample C Male 92.2
Sample D Male 64.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 184.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 184.7
Samples: 4

Max nTPM: 210.7
Min nTPM: 152.9
Sample A Male 210.7
Sample B Male 181.5
Sample C Female 152.9
Sample D Female 193.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
512999 Antisense, RP_040809_02_G08, Mouse strain C57BL/6J (56 days, male) 4.8
81599652 Antisense, RP_071213_01_A11, Mouse strain C57BL/6J (56 days, male) 4.4

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