MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA Brain:58.7 nTPM
GTEx:21.3 nTPM
FANTOM5:69.2 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:16.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
1830 Male, age 51, unknown 57.0
1870 Female, age 42, unknown 56.1
1833 Male, age 53, unknown 55.8
2019 Male, age 18, unknown 54.4
2411 Female, age 72, unknown 54.3
2828 Female, age 72, unknown 52.5
2666 Male, age 74, left hemisphere 52.3
1827 Male, age 72, unknown 49.7
2219 Male, age 76, both hemispheres 49.0
2586 Male, age 75, left hemisphere 48.2
Dorsal raphe nucleus
nTPM: 49.9
2750 Male, age 76, both hemispheres 53.5
2016 Female, age 72, unknown 52.1
1828 Male, age 53, unknown 51.1
2047 Male, age 72, unknown 47.4
2298 Female, age 72, unknown 45.6
Inferior colliculus
nTPM: 51.2
1890 Male, age 53, unknown 53.7
2849 Male, age 72, unknown 52.0
1848 Female, age 42, unknown 50.5
2097 Female, age 72, unknown 48.8
Median raphe nucleus
nTPM: 47.5
2220 Male, age 76, midline 47.5
Periaquaductal grey, anterior
nTPM: 47.1
1947 Male, age 18, unknown 49.4
2502 Female, age 75, unknown 47.4
1795 Male, age 51, unknown 44.5
Periaquaductal grey, dorsal
nTPM: 51.9
2850 Male, age 76, both hemispheres 57.7
2464 Female, age 72, unknown 52.0
1840 Male, age 53, unknown 50.0
1831 Male, age 72, unknown 47.9
Periaquaductal grey, lateral
nTPM: 50.6
2140 Male, age 76, both hemispheres 55.6
2053 Male, age 18, unknown 50.3
2272 Male, age 74, both hemispheres 45.8
Pretectal area
nTPM: 50.3
2316 Male, age 76, right hemisphere 55.3
2667 Female, age 75, unknown 53.2
1817 Female, age 42, unknown 52.7
1815 Male, age 53, unknown 52.5
2007 Male, age 72, unknown 51.9
2825 Male, age 18, unknown 50.1
1944 Female, age 72, unknown 49.1
1816 Male, age 51, unknown 48.4
2407 Male, age 75, both hemispheres 48.3
2224 Female, age 72, unknown 47.2
2273 Male, age 74, both hemispheres 44.3
Red nucleus
nTPM: 58.7
1865 Male, age 51, unknown 64.9
2503 Female, age 72, unknown 64.1
1904 Male, age 53, unknown 61.9
1821 Female, age 72, unknown 61.1
2588 Male, age 74, left hemisphere 59.2
1954 Female, age 42, unknown 58.6
2823 Male, age 76, right hemisphere 58.4
2769 Male, age 72, unknown 57.4
2227 Male, age 72, unknown 56.5
2725 Female, age 75, unknown 55.8
2785 Male, age 18, unknown 55.7
2584 Male, age 75, left hemisphere 50.3
Substantia nigra
nTPM: 53.9
2409 Female, age 72, unknown 59.8
2241 Male, age 72, unknown 57.9
2699 Male, age 18, unknown 56.0
1851 Male, age 51, unknown 55.2
1916 Female, age 42, unknown 54.1
2583 Male, age 75, right hemisphere 53.7
2665 Male, age 74, both hemispheres 52.8
2590 Female, age 75, unknown 50.7
1889 Female, age 72, unknown 50.0
1941 Male, age 53, unknown 49.2
Superior colliculus
nTPM: 49.9
1913 Female, age 42, unknown 57.5
1995 Male, age 72, unknown 56.3
2668 Female, age 75, unknown 51.8
1895 Male, age 76, right hemisphere 51.5
1839 Male, age 51, unknown 48.9
2087 Female, age 72, unknown 48.7
1796 Male, age 53, unknown 47.4
2587 Male, age 74, left hemisphere 47.1
2261 Male, age 18, unknown 46.7
2664 Male, age 75, both hemispheres 42.8
Ventral tegmental area
nTPM: 51.0
2410 Female, age 72, unknown 57.3
2223 Female, age 72, unknown 54.4
1915 Female, age 42, unknown 50.2
2218 Male, age 76, both hemispheres 49.7
2021 Male, age 53, unknown 48.1
1942 Male, age 51, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 139

Max nTPM: 40.8
Min nTPM: 11.5
Std nTPM: 4.4
Median nTPM: 20.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 33.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 31.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 30.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 29.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 29.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 29.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 28.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 28.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.2
FF:10158-103A5 76 years, female 69.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.8
Samples: 4

Max nTPM: 33.9
Min nTPM: 22.6
Sample A Female 22.6
Sample B Female 26.8
Sample C Male 23.9
Sample D Male 33.9
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 33.9
Min nTPM: 22.2
Sample A Female 33.9
Sample B Female 26.1
Sample C Male 23.0
Sample D Male 22.2
Periaqueductal gray
nTPM: 24.3
Samples: 3

Max nTPM: 26.0
Min nTPM: 22.7
Sample B Female 26.0
Sample C Male 22.7
Sample D Male 24.3
Superior colliculi
nTPM: 25.9
Samples: 4

Max nTPM: 27.6
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 27.6
Sample C Male 25.1
Sample D Male 26.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.4
Sample A Male 16.0
Sample B Male 16.4
Sample C Female 19.5
Sample D Female 15.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74265352 Antisense, RP_051219_03_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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