MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA Brain:43.9 nTPM
GTEx:21.2 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:17.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2586 Male, age 75, left hemisphere 67.8
1870 Female, age 42, unknown 44.2
2828 Female, age 72, unknown 44.0
1830 Male, age 51, unknown 43.0
2019 Male, age 18, unknown 42.9
1833 Male, age 53, unknown 41.8
2666 Male, age 74, left hemisphere 40.3
1827 Male, age 72, unknown 39.4
2411 Female, age 72, unknown 38.6
2219 Male, age 76, both hemispheres 26.2
Dorsal raphe nucleus
nTPM: 35.4
1828 Male, age 53, unknown 40.6
2750 Male, age 76, both hemispheres 36.0
2016 Female, age 72, unknown 35.1
2047 Male, age 72, unknown 34.1
2298 Female, age 72, unknown 31.2
Inferior colliculus
nTPM: 34.1
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 35.8
2849 Male, age 72, unknown 34.4
2097 Female, age 72, unknown 28.3
Median raphe nucleus
nTPM: 27.1
2220 Male, age 76, midline 27.1
Periaquaductal grey, anterior
nTPM: 38.6
2502 Female, age 75, unknown 45.6
1795 Male, age 51, unknown 35.4
1947 Male, age 18, unknown 34.7
Periaquaductal grey, dorsal
nTPM: 36.0
2850 Male, age 76, both hemispheres 38.4
1840 Male, age 53, unknown 36.7
1831 Male, age 72, unknown 35.0
2464 Female, age 72, unknown 34.1
Periaquaductal grey, lateral
nTPM: 35.5
2053 Male, age 18, unknown 36.1
2140 Male, age 76, both hemispheres 35.2
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 39.8
2667 Female, age 75, unknown 49.2
2407 Male, age 75, both hemispheres 45.9
2273 Male, age 74, both hemispheres 45.8
1817 Female, age 42, unknown 40.9
2007 Male, age 72, unknown 39.8
1816 Male, age 51, unknown 39.6
2316 Male, age 76, right hemisphere 36.7
1944 Female, age 72, unknown 36.3
2825 Male, age 18, unknown 34.5
1815 Male, age 53, unknown 34.4
2224 Female, age 72, unknown 34.2
Red nucleus
nTPM: 43.9
1821 Female, age 72, unknown 50.6
2584 Male, age 75, left hemisphere 50.5
1904 Male, age 53, unknown 47.9
1865 Male, age 51, unknown 47.7
2588 Male, age 74, left hemisphere 45.4
2227 Male, age 72, unknown 44.9
2785 Male, age 18, unknown 44.4
2769 Male, age 72, unknown 42.9
1954 Female, age 42, unknown 42.4
2823 Male, age 76, right hemisphere 40.6
2503 Female, age 72, unknown 39.2
2725 Female, age 75, unknown 30.6
Substantia nigra
nTPM: 38.6
2699 Male, age 18, unknown 44.7
2583 Male, age 75, right hemisphere 40.8
2665 Male, age 74, both hemispheres 39.5
1851 Male, age 51, unknown 39.4
2590 Female, age 75, unknown 39.2
1916 Female, age 42, unknown 39.0
1889 Female, age 72, unknown 37.8
1941 Male, age 53, unknown 37.2
2241 Male, age 72, unknown 34.2
2409 Female, age 72, unknown 34.2
Superior colliculus
nTPM: 39.4
2664 Male, age 75, both hemispheres 61.4
1995 Male, age 72, unknown 47.3
1913 Female, age 42, unknown 41.6
2261 Male, age 18, unknown 39.3
2087 Female, age 72, unknown 36.7
2668 Female, age 75, unknown 36.3
1839 Male, age 51, unknown 35.6
1796 Male, age 53, unknown 33.9
2587 Male, age 74, left hemisphere 33.2
1895 Male, age 76, right hemisphere 28.5
Ventral tegmental area
nTPM: 37.7
2223 Female, age 72, unknown 49.5
2410 Female, age 72, unknown 40.7
1942 Male, age 51, unknown 37.6
2021 Male, age 53, unknown 35.0
1915 Female, age 42, unknown 33.5
2218 Male, age 76, both hemispheres 29.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.2
Samples: 139

Max nTPM: 50.1
Min nTPM: 8.4
Std nTPM: 6.9
Median nTPM: 19.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 50.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 40.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 39.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 39.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 37.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 36.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 33.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 33.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 32.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.1
FF:10158-103A5 76 years, female 87.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.5
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.7
Sample A Female 17.3
Sample B Female 13.7
Sample C Male 14.8
Sample D Male 20.1
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 11.3
Sample A Female 30.8
Sample B Female 15.2
Sample C Male 11.9
Sample D Male 11.3
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 12.2
Min nTPM: 11.6
Sample B Female 12.2
Sample C Male 11.6
Sample D Male 11.9
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.1
Sample A Female 16.9
Sample B Female 14.1
Sample C Male 15.8
Sample D Male 15.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.6
Sample A Male 17.3
Sample B Male 15.6
Sample C Female 18.5
Sample D Female 20.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67978498 Antisense, RP_040923_01_D01, Mouse strain C57BL/6J (56 days, male) 0.0

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