HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:36.6 nTPM
HPA Brain:30.5 nTPM
GTEx:36.6 nTPM
FANTOM5:30.4 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:24.4 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022924
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Hippocampus
nTPM: 28.4
2529 Female, age 94, left hemisphere 35.3
1911 Female, age 85, right hemisphere 29.9
2148 Female, age 91, left hemisphere 28.2
1898 Male, age 80, left hemisphere 27.6
1855 Male, age 76, left hemisphere 26.7
2621 Female, age 67, right hemisphere 22.4
Dentate gyrus
nTPM: 27.8
2530 Female, age 94, left hemisphere 37.4
2528 Male, age 74, both hemispheres 37.3
2010 Male, age 76, both hemispheres 30.1
2246 Female, age 85, both hemispheres 23.8
2531 Female, age 67, both hemispheres 20.6
1927 Female, age 91, both hemispheres 17.3
Entorhinal gyrus
nTPM: 26.5
2117 Female, age 91, right hemisphere 43.6
2764 Male, age 80, right hemisphere 29.5
1787 Male, age 76, left hemisphere 23.6
1938 Female, age 85, left hemisphere 21.9
2613 Female, age 94, left hemisphere 20.2
2686 Male, age 75, right hemisphere 19.9
Hippocampus, CA1
nTPM: 22.5
2527 Male, age 74, both hemispheres 28.3
1873 Female, age 85, both hemispheres 24.6
2082 Female, age 91, right hemisphere 24.2
2045 Male, age 76, both hemispheres 17.8
2749 Male, age 80, left hemisphere 17.8
Hippocampus, CA2
nTPM: 25.5
2249 Male, age 74, both hemispheres 34.0
1963 Male, age 80, left hemisphere 28.2
2437 Female, age 94, left hemisphere 26.3
2113 Female, age 91, right hemisphere 26.2
1940 Female, age 85, left hemisphere 22.7
1892 Male, age 76, both hemispheres 15.5
Hippocampus, CA3
nTPM: 22.4
1891 Female, age 85, both hemispheres 29.3
2620 Female, age 94, left hemisphere 26.1
2436 Male, age 74, both hemispheres 24.0
1867 Male, age 76, both hemispheres 20.7
2861 Female, age 67, both hemispheres 18.5
2137 Male, age 80, left hemisphere 16.0
Parahippocampal cortex
nTPM: 20.2
2692 Male, age 74, both hemispheres 23.7
2018 Male, age 76, both hemispheres 23.1
2532 Female, age 72, left hemisphere 23.0
1990 Female, age 91, right hemisphere 22.4
2245 Female, age 91, both hemispheres 22.1
1933 Female, age 85, both hemispheres 18.7
1850 Male, age 80, both hemispheres 18.3
2250 Female, age 67, right hemisphere 17.5
2622 Female, age 67, right hemisphere 16.5
2693 Female, age 94, both hemispheres 16.4
Perirhinal gyrus
nTPM: 16.4
1794 Male, age 80, right hemisphere 18.8
2521 Female, age 94, right hemisphere 18.8
1847 Female, age 91, left hemisphere 15.5
2848 Male, age 76, right hemisphere 14.9
1841 Female, age 85, right hemisphere 13.7
Subiculum
nTPM: 30.5
2042 Male, age 76, both hemispheres 42.0
2729 Female, age 91, right hemisphere 32.0
1977 Female, age 85, both hemispheres 28.7
2619 Male, age 74, both hemispheres 28.2
1901 Male, age 80, both hemispheres 28.1
2438 Female, age 94, left hemisphere 24.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.6
Samples: 197

Max nTPM: 110.2
Min nTPM: 8.6
Std nTPM: 16.0
Median nTPM: 33.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 110.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 100.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 98.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 83.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 82.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 72.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 72.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 70.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 70.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 69.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 65.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.4
FF:10153-102I9 76 years, female 42.2
FF:10169-103B7 60 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Subiculum
nTPM: 13.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 10.3
Sample A Female 16.9
Sample B Female 14.2
Sample C Male 11.9
Sample D Male 10.3
Dorsal hippocampus
nTPM: 21.1
Samples: 4

Max nTPM: 32.3
Min nTPM: 8.9
Sample A Female 32.3
Sample B Female 16.5
Sample C Male 26.6
Sample D Male 8.9
Entorhinal cortex
nTPM: 10.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.8
Sample A Female 10.3
Sample B Female 11.8
Sample C Male 11.2
Sample D Male 9.8
Ventral hippocampus
nTPM: 18.3
Samples: 4

Max nTPM: 21.5
Min nTPM: 11.5
Sample A Female 21.5
Sample B Female 11.5
Sample C Male 20.8
Sample D Male 19.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.2
Sample A Male 23.4
Sample B Male 19.0
Sample C Female 20.6
Sample D Female 17.2
Hippocampal formation
nTPM: 24.4
Samples: 4

Max nTPM: 26.5
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 23.7
Sample C Female 26.5
Sample D Female 26.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
645 Antisense, RP_Baylor_102891, Mouse strain C57BL/6J (56 days, male) 2.8
646 Antisense, RP_Baylor_102891, Mouse strain C57BL/6J (56 days, male) 2.0

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