MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.5 nTPM
HPA Brain:48.1 nTPM
GTEx:41.5 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:24.0 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
2411 Female, age 72, unknown 53.7
2828 Female, age 72, unknown 51.0
1870 Female, age 42, unknown 48.7
1833 Male, age 53, unknown 47.9
1830 Male, age 51, unknown 47.1
2586 Male, age 75, left hemisphere 46.0
2019 Male, age 18, unknown 45.2
1827 Male, age 72, unknown 35.8
2219 Male, age 76, both hemispheres 33.3
2666 Male, age 74, left hemisphere 30.7
Dorsal raphe nucleus
nTPM: 41.4
2750 Male, age 76, both hemispheres 54.3
2016 Female, age 72, unknown 47.8
2298 Female, age 72, unknown 38.3
1828 Male, age 53, unknown 37.0
2047 Male, age 72, unknown 29.6
Inferior colliculus
nTPM: 34.7
2097 Female, age 72, unknown 35.4
1848 Female, age 42, unknown 35.3
1890 Male, age 53, unknown 34.8
2849 Male, age 72, unknown 33.4
Median raphe nucleus
nTPM: 27.1
2220 Male, age 76, midline 27.1
Periaquaductal grey, anterior
nTPM: 38.0
2502 Female, age 75, unknown 48.0
1795 Male, age 51, unknown 35.3
1947 Male, age 18, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 34.0
2464 Female, age 72, unknown 41.7
1831 Male, age 72, unknown 35.9
1840 Male, age 53, unknown 30.9
2850 Male, age 76, both hemispheres 27.5
Periaquaductal grey, lateral
nTPM: 35.4
2053 Male, age 18, unknown 40.5
2272 Male, age 74, both hemispheres 36.6
2140 Male, age 76, both hemispheres 29.2
Pretectal area
nTPM: 35.3
2273 Male, age 74, both hemispheres 46.7
2316 Male, age 76, right hemisphere 41.2
2667 Female, age 75, unknown 40.8
2407 Male, age 75, both hemispheres 40.2
1815 Male, age 53, unknown 37.7
2825 Male, age 18, unknown 35.7
2224 Female, age 72, unknown 34.7
1817 Female, age 42, unknown 32.0
2007 Male, age 72, unknown 28.2
1944 Female, age 72, unknown 26.3
1816 Male, age 51, unknown 25.2
Red nucleus
nTPM: 48.1
2227 Male, age 72, unknown 58.8
2769 Male, age 72, unknown 58.0
2785 Male, age 18, unknown 55.1
1904 Male, age 53, unknown 52.7
1865 Male, age 51, unknown 50.2
2823 Male, age 76, right hemisphere 50.1
2503 Female, age 72, unknown 49.3
1821 Female, age 72, unknown 48.1
1954 Female, age 42, unknown 44.7
2588 Male, age 74, left hemisphere 38.4
2725 Female, age 75, unknown 36.6
2584 Male, age 75, left hemisphere 35.4
Substantia nigra
nTPM: 31.5
1851 Male, age 51, unknown 39.2
2583 Male, age 75, right hemisphere 37.6
2699 Male, age 18, unknown 35.0
2590 Female, age 75, unknown 34.7
1889 Female, age 72, unknown 31.3
1916 Female, age 42, unknown 31.1
2409 Female, age 72, unknown 30.0
1941 Male, age 53, unknown 28.4
2241 Male, age 72, unknown 24.8
2665 Male, age 74, both hemispheres 23.4
Superior colliculus
nTPM: 42.0
1995 Male, age 72, unknown 66.0
1913 Female, age 42, unknown 60.1
2664 Male, age 75, both hemispheres 49.2
1839 Male, age 51, unknown 40.6
2587 Male, age 74, left hemisphere 40.5
1796 Male, age 53, unknown 39.4
1895 Male, age 76, right hemisphere 32.1
2668 Female, age 75, unknown 31.2
2261 Male, age 18, unknown 30.3
2087 Female, age 72, unknown 30.2
Ventral tegmental area
nTPM: 39.1
2223 Female, age 72, unknown 46.3
2410 Female, age 72, unknown 43.8
2021 Male, age 53, unknown 39.0
1942 Male, age 51, unknown 38.9
1915 Female, age 42, unknown 34.6
2218 Male, age 76, both hemispheres 32.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.5
Samples: 139

Max nTPM: 124.0
Min nTPM: 14.4
Std nTPM: 15.3
Median nTPM: 38.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 124.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 97.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 94.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 88.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 83.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 76.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 67.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 62.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 61.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 61.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.1
FF:10158-103A5 76 years, female 87.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 42.9
Min nTPM: 21.6
Sample A Female 37.1
Sample B Female 21.6
Sample C Male 25.9
Sample D Male 42.9
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 66.4
Min nTPM: 19.6
Sample A Female 66.4
Sample B Female 29.5
Sample C Male 20.1
Sample D Male 19.6
Periaqueductal gray
nTPM: 23.4
Samples: 3

Max nTPM: 26.6
Min nTPM: 21.1
Sample B Female 26.6
Sample C Male 21.1
Sample D Male 22.5
Superior colliculi
nTPM: 27.3
Samples: 4

Max nTPM: 36.2
Min nTPM: 18.6
Sample A Female 36.2
Sample B Female 18.6
Sample C Male 26.2
Sample D Male 28.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 26.0
Min nTPM: 22.1
Sample A Male 26.0
Sample B Male 23.4
Sample C Female 22.1
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
646 Antisense, RP_Baylor_102891, Mouse strain C57BL/6J (56 days, male) 2.8
645 Antisense, RP_Baylor_102891, Mouse strain C57BL/6J (56 days, male) 2.0

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