MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:27.3 nTPM
GTEx:21.1 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:15.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.8
2019 Male, age 18, unknown 32.1
2411 Female, age 72, unknown 28.7
1827 Male, age 72, unknown 26.0
2828 Female, age 72, unknown 24.3
2219 Male, age 76, both hemispheres 24.2
1833 Male, age 53, unknown 23.4
2586 Male, age 75, left hemisphere 22.9
2666 Male, age 74, left hemisphere 22.8
1870 Female, age 42, unknown 22.3
1830 Male, age 51, unknown 21.6
Dorsal raphe nucleus
nTPM: 24.4
2298 Female, age 72, unknown 29.6
1828 Male, age 53, unknown 24.3
2047 Male, age 72, unknown 23.5
2750 Male, age 76, both hemispheres 22.8
2016 Female, age 72, unknown 21.8
Inferior colliculus
nTPM: 27.0
2097 Female, age 72, unknown 30.9
1890 Male, age 53, unknown 28.0
1848 Female, age 42, unknown 25.1
2849 Male, age 72, unknown 24.3
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 24.3
1947 Male, age 18, unknown 24.5
1795 Male, age 51, unknown 24.2
2502 Female, age 75, unknown 24.2
Periaquaductal grey, dorsal
nTPM: 22.1
1840 Male, age 53, unknown 23.1
1831 Male, age 72, unknown 22.4
2464 Female, age 72, unknown 22.4
2850 Male, age 76, both hemispheres 20.4
Periaquaductal grey, lateral
nTPM: 21.9
2272 Male, age 74, both hemispheres 24.1
2053 Male, age 18, unknown 21.0
2140 Male, age 76, both hemispheres 20.7
Pretectal area
nTPM: 27.3
1817 Female, age 42, unknown 35.0
2007 Male, age 72, unknown 31.2
1816 Male, age 51, unknown 30.9
1815 Male, age 53, unknown 30.3
2667 Female, age 75, unknown 28.7
1944 Female, age 72, unknown 28.1
2224 Female, age 72, unknown 26.3
2273 Male, age 74, both hemispheres 24.5
2825 Male, age 18, unknown 23.2
2407 Male, age 75, both hemispheres 21.2
2316 Male, age 76, right hemisphere 20.3
Red nucleus
nTPM: 26.7
1821 Female, age 72, unknown 31.0
2588 Male, age 74, left hemisphere 28.4
1954 Female, age 42, unknown 28.2
2725 Female, age 75, unknown 27.6
2785 Male, age 18, unknown 27.4
2823 Male, age 76, right hemisphere 26.7
1865 Male, age 51, unknown 26.4
1904 Male, age 53, unknown 26.3
2227 Male, age 72, unknown 26.0
2503 Female, age 72, unknown 25.6
2769 Male, age 72, unknown 24.1
2584 Male, age 75, left hemisphere 22.2
Substantia nigra
nTPM: 27.1
2241 Male, age 72, unknown 34.5
1916 Female, age 42, unknown 32.1
1889 Female, age 72, unknown 31.7
1851 Male, age 51, unknown 27.5
1941 Male, age 53, unknown 27.1
2665 Male, age 74, both hemispheres 25.6
2583 Male, age 75, right hemisphere 24.0
2590 Female, age 75, unknown 23.7
2699 Male, age 18, unknown 23.1
2409 Female, age 72, unknown 21.5
Superior colliculus
nTPM: 24.9
2087 Female, age 72, unknown 32.7
1895 Male, age 76, right hemisphere 26.8
2587 Male, age 74, left hemisphere 26.0
2261 Male, age 18, unknown 25.5
2668 Female, age 75, unknown 25.2
1796 Male, age 53, unknown 24.7
1839 Male, age 51, unknown 24.1
1913 Female, age 42, unknown 23.4
2664 Male, age 75, both hemispheres 20.5
1995 Male, age 72, unknown 19.7
Ventral tegmental area
nTPM: 24.9
2410 Female, age 72, unknown 29.7
2218 Male, age 76, both hemispheres 25.1
1942 Male, age 51, unknown 24.8
1915 Female, age 42, unknown 24.6
2223 Female, age 72, unknown 24.2
2021 Male, age 53, unknown 21.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 29.4
Min nTPM: 13.6
Std nTPM: 3.3
Median nTPM: 21.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 29.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 28.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 28.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 28.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 27.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 27.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 25.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 25.4
Min nTPM: 20.6
Sample A Female 25.4
Sample B Female 20.6
Sample C Male 24.6
Sample D Male 22.8
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 27.0
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 24.9
Sample C Male 26.4
Sample D Male 27.0
Periaqueductal gray
nTPM: 23.8
Samples: 3

Max nTPM: 24.5
Min nTPM: 22.6
Sample B Female 24.5
Sample C Male 24.2
Sample D Male 22.6
Superior colliculi
nTPM: 25.1
Samples: 4

Max nTPM: 27.3
Min nTPM: 19.4
Sample A Female 26.5
Sample B Female 19.4
Sample C Male 27.0
Sample D Male 27.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 15.1
Sample A Male 16.4
Sample B Male 15.1
Sample C Female 16.0
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68523162 Antisense, RP_050118_02_C05, Mouse strain C57BL/6J (56 days, male) 1.4

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