HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:5.3 nTPM
HPA Brain:99.7 nTPM
GTEx:5.3 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Pig:69.4 nTPM
Mouse:101.0 nTPM
Allen mouse:7.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022148Antibody HPA022896
Glial cells MediumNot detected
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 99.7
Sample id Sample description nTPM
Hippocampus
nTPM: 57.1
1898 Male, age 80, left hemisphere 72.4
2621 Female, age 67, right hemisphere 72.3
2148 Female, age 91, left hemisphere 67.2
1855 Male, age 76, left hemisphere 57.6
2529 Female, age 94, left hemisphere 44.1
1911 Female, age 85, right hemisphere 29.1
Dentate gyrus
nTPM: 60.0
2531 Female, age 67, both hemispheres 93.3
1927 Female, age 91, both hemispheres 64.6
2528 Male, age 74, both hemispheres 54.9
2530 Female, age 94, left hemisphere 51.7
2010 Male, age 76, both hemispheres 47.7
2246 Female, age 85, both hemispheres 47.6
Entorhinal gyrus
nTPM: 99.7
2613 Female, age 94, left hemisphere 191.2
2686 Male, age 75, right hemisphere 102.9
2764 Male, age 80, right hemisphere 96.1
1938 Female, age 85, left hemisphere 83.6
1787 Male, age 76, left hemisphere 72.6
2117 Female, age 91, right hemisphere 51.8
Hippocampus, CA1
nTPM: 53.7
2527 Male, age 74, both hemispheres 61.2
1873 Female, age 85, both hemispheres 56.4
2045 Male, age 76, both hemispheres 55.8
2749 Male, age 80, left hemisphere 53.9
2082 Female, age 91, right hemisphere 41.0
Hippocampus, CA2
nTPM: 52.7
1963 Male, age 80, left hemisphere 78.2
2437 Female, age 94, left hemisphere 72.8
1892 Male, age 76, both hemispheres 62.4
2113 Female, age 91, right hemisphere 39.0
1940 Female, age 85, left hemisphere 32.8
2249 Male, age 74, both hemispheres 31.0
Hippocampus, CA3
nTPM: 60.0
2620 Female, age 94, left hemisphere 98.1
2861 Female, age 67, both hemispheres 95.8
1867 Male, age 76, both hemispheres 44.4
1891 Female, age 85, both hemispheres 44.1
2436 Male, age 74, both hemispheres 43.6
2137 Male, age 80, left hemisphere 34.2
Parahippocampal cortex
nTPM: 76.4
2622 Female, age 67, right hemisphere 97.6
1850 Male, age 80, both hemispheres 94.4
2692 Male, age 74, both hemispheres 92.3
1990 Female, age 91, right hemisphere 85.8
2693 Female, age 94, both hemispheres 81.7
2532 Female, age 72, left hemisphere 76.0
1933 Female, age 85, both hemispheres 73.3
2245 Female, age 91, both hemispheres 60.9
2250 Female, age 67, right hemisphere 60.5
2018 Male, age 76, both hemispheres 41.6
Perirhinal gyrus
nTPM: 83.7
1847 Female, age 91, left hemisphere 118.4
1794 Male, age 80, right hemisphere 82.2
2848 Male, age 76, right hemisphere 77.4
2521 Female, age 94, right hemisphere 73.1
1841 Female, age 85, right hemisphere 67.4
Subiculum
nTPM: 51.0
2438 Female, age 94, left hemisphere 66.5
2619 Male, age 74, both hemispheres 65.6
1977 Female, age 85, both hemispheres 63.3
2729 Female, age 91, right hemisphere 46.9
1901 Male, age 80, both hemispheres 42.2
2042 Male, age 76, both hemispheres 21.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 5.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5.3
Samples: 197

Max nTPM: 28.1
Min nTPM: 0.1
Std nTPM: 5.6
Median nTPM: 3.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 28.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 25.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 24.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 23.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 23.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 22.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 22.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 22.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 19.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 18.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 18.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.7
FF:10153-102I9 76 years, female 16.8
FF:10169-103B7 60 years, female 16.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 69.4
Pig sample Sample description nTPM
Subiculum
nTPM: 62.8
Samples: 4

Max nTPM: 84.3
Min nTPM: 49.9
Sample A Female 84.3
Sample B Female 57.7
Sample C Male 59.3
Sample D Male 49.9
Dorsal hippocampus
nTPM: 44.7
Samples: 4

Max nTPM: 52.6
Min nTPM: 37.7
Sample A Female 44.3
Sample B Female 52.6
Sample C Male 44.1
Sample D Male 37.7
Entorhinal cortex
nTPM: 69.5
Samples: 4

Max nTPM: 76.9
Min nTPM: 64.1
Sample A Female 72.1
Sample B Female 64.1
Sample C Male 76.9
Sample D Male 64.8
Ventral hippocampus
nTPM: 49.7
Samples: 4

Max nTPM: 70.4
Min nTPM: 38.6
Sample A Female 38.6
Sample B Female 46.3
Sample C Male 70.4
Sample D Male 43.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 101.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 101.0
Samples: 4

Max nTPM: 119.2
Min nTPM: 92.5
Sample A Male 95.0
Sample B Male 97.3
Sample C Female 92.5
Sample D Female 119.2
Hippocampal formation
nTPM: 47.6
Samples: 4

Max nTPM: 61.1
Min nTPM: 33.9
Sample A Male 61.1
Sample B Male 44.4
Sample C Female 33.9
Sample D Female 51.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.4
69672796 Antisense, RP_050428_04_E04, Mouse strain C57BL/6J (56 days, male) 8.3
74882606 Antisense, RP_060315_04_F06, Mouse strain C57BL/6J (56 days, male) 6.4

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