MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.9 nTPM
HPA Brain:71.1 nTPM
GTEx:39.9 nTPM
FANTOM5:319.7 Scaled Tags Per Million
Pig:69.1 nTPM
Mouse:30.7 nTPM
Allen mouse:12.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.1
2219 Male, age 76, both hemispheres 73.5
1830 Male, age 51, unknown 67.1
2828 Female, age 72, unknown 66.4
1827 Male, age 72, unknown 65.2
1833 Male, age 53, unknown 64.8
2666 Male, age 74, left hemisphere 64.3
2586 Male, age 75, left hemisphere 61.2
1870 Female, age 42, unknown 59.0
2019 Male, age 18, unknown 55.7
2411 Female, age 72, unknown 53.5
Dorsal raphe nucleus
nTPM: 54.2
2016 Female, age 72, unknown 62.6
1828 Male, age 53, unknown 57.5
2750 Male, age 76, both hemispheres 55.1
2047 Male, age 72, unknown 53.8
2298 Female, age 72, unknown 41.8
Inferior colliculus
nTPM: 68.6
2849 Male, age 72, unknown 82.2
1848 Female, age 42, unknown 69.7
1890 Male, age 53, unknown 65.1
2097 Female, age 72, unknown 57.5
Median raphe nucleus
nTPM: 63.4
2220 Male, age 76, midline 63.4
Periaquaductal grey, anterior
nTPM: 60.8
1947 Male, age 18, unknown 64.6
2502 Female, age 75, unknown 59.7
1795 Male, age 51, unknown 58.1
Periaquaductal grey, dorsal
nTPM: 71.1
2850 Male, age 76, both hemispheres 81.4
1831 Male, age 72, unknown 74.1
2464 Female, age 72, unknown 66.0
1840 Male, age 53, unknown 63.0
Periaquaductal grey, lateral
nTPM: 65.3
2140 Male, age 76, both hemispheres 78.2
2053 Male, age 18, unknown 65.1
2272 Male, age 74, both hemispheres 52.6
Pretectal area
nTPM: 61.2
2316 Male, age 76, right hemisphere 72.8
2407 Male, age 75, both hemispheres 70.9
2825 Male, age 18, unknown 65.4
1815 Male, age 53, unknown 63.3
1816 Male, age 51, unknown 62.5
2667 Female, age 75, unknown 61.6
1944 Female, age 72, unknown 60.5
1817 Female, age 42, unknown 55.5
2273 Male, age 74, both hemispheres 55.3
2007 Male, age 72, unknown 53.4
2224 Female, age 72, unknown 52.2
Red nucleus
nTPM: 62.3
2503 Female, age 72, unknown 71.7
2725 Female, age 75, unknown 68.8
1954 Female, age 42, unknown 67.7
1865 Male, age 51, unknown 65.7
2588 Male, age 74, left hemisphere 64.4
2823 Male, age 76, right hemisphere 62.3
1904 Male, age 53, unknown 62.1
2584 Male, age 75, left hemisphere 61.0
2769 Male, age 72, unknown 58.7
2227 Male, age 72, unknown 58.4
2785 Male, age 18, unknown 53.6
1821 Female, age 72, unknown 52.8
Substantia nigra
nTPM: 51.7
2409 Female, age 72, unknown 62.0
2699 Male, age 18, unknown 59.1
2583 Male, age 75, right hemisphere 56.2
2665 Male, age 74, both hemispheres 53.1
1889 Female, age 72, unknown 52.2
2590 Female, age 75, unknown 51.9
1941 Male, age 53, unknown 51.6
2241 Male, age 72, unknown 45.6
1851 Male, age 51, unknown 43.4
1916 Female, age 42, unknown 42.3
Superior colliculus
nTPM: 61.9
1895 Male, age 76, right hemisphere 72.4
1995 Male, age 72, unknown 67.4
2664 Male, age 75, both hemispheres 67.4
1913 Female, age 42, unknown 64.3
1839 Male, age 51, unknown 63.7
2261 Male, age 18, unknown 60.6
2087 Female, age 72, unknown 60.3
1796 Male, age 53, unknown 56.5
2668 Female, age 75, unknown 55.2
2587 Male, age 74, left hemisphere 51.1
Ventral tegmental area
nTPM: 53.3
2021 Male, age 53, unknown 59.0
2218 Male, age 76, both hemispheres 57.6
1942 Male, age 51, unknown 54.6
2223 Female, age 72, unknown 53.6
2410 Female, age 72, unknown 47.8
1915 Female, age 42, unknown 47.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.9
Samples: 139

Max nTPM: 94.4
Min nTPM: 12.4
Std nTPM: 12.2
Median nTPM: 38.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 94.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 82.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 76.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 63.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 62.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 61.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 60.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 58.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 56.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 55.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 319.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 319.7
FF:10158-103A5 76 years, female 319.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.1
Samples: 4

Max nTPM: 71.3
Min nTPM: 42.9
Sample A Female 42.9
Sample B Female 64.1
Sample C Male 62.0
Sample D Male 71.3
Midbrain
nTPM: 63.2
Samples: 4

Max nTPM: 71.7
Min nTPM: 51.4
Sample A Female 51.4
Sample B Female 65.3
Sample C Male 64.2
Sample D Male 71.7
Periaqueductal gray
nTPM: 69.1
Samples: 3

Max nTPM: 77.2
Min nTPM: 63.2
Sample B Female 66.9
Sample C Male 63.2
Sample D Male 77.2
Superior colliculi
nTPM: 59.7
Samples: 4

Max nTPM: 67.4
Min nTPM: 46.3
Sample A Female 46.3
Sample B Female 62.5
Sample C Male 62.5
Sample D Male 67.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 36.5
Min nTPM: 26.6
Sample A Male 36.5
Sample B Male 29.4
Sample C Female 30.5
Sample D Female 26.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.7
70218944 Antisense, RP_050524_01_F10, Mouse strain C57BL/6J (56 days, male) 12.7

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