HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:41.6 nTPM
HPA Brain:70.4 nTPM
GTEx:41.6 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:3.3 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036348Antibody HPA036349Antibody CAB002422Antibody CAB005258
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells MediumMediumNot detectedLow









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 70.4
Sample id Sample description nTPM
Hippocampus
nTPM: 70.4
2529 Female, age 94, left hemisphere 92.9
2148 Female, age 91, left hemisphere 80.4
1911 Female, age 85, right hemisphere 76.5
1855 Male, age 76, left hemisphere 64.5
1898 Male, age 80, left hemisphere 60.6
2621 Female, age 67, right hemisphere 47.7
Dentate gyrus
nTPM: 67.2
2528 Male, age 74, both hemispheres 104.1
2530 Female, age 94, left hemisphere 94.0
2246 Female, age 85, both hemispheres 61.5
2010 Male, age 76, both hemispheres 50.2
2531 Female, age 67, both hemispheres 48.6
1927 Female, age 91, both hemispheres 45.2
Entorhinal gyrus
nTPM: 53.7
2117 Female, age 91, right hemisphere 81.4
2686 Male, age 75, right hemisphere 57.7
1787 Male, age 76, left hemisphere 53.1
2764 Male, age 80, right hemisphere 49.5
2613 Female, age 94, left hemisphere 41.1
1938 Female, age 85, left hemisphere 39.3
Hippocampus, CA1
nTPM: 56.0
1873 Female, age 85, both hemispheres 80.5
2527 Male, age 74, both hemispheres 77.1
2082 Female, age 91, right hemisphere 67.5
2045 Male, age 76, both hemispheres 31.2
2749 Male, age 80, left hemisphere 23.9
Hippocampus, CA2
nTPM: 57.0
2249 Male, age 74, both hemispheres 70.1
2113 Female, age 91, right hemisphere 69.0
1940 Female, age 85, left hemisphere 66.8
2437 Female, age 94, left hemisphere 64.6
1963 Male, age 80, left hemisphere 47.1
1892 Male, age 76, both hemispheres 24.3
Hippocampus, CA3
nTPM: 58.1
2620 Female, age 94, left hemisphere 87.9
2861 Female, age 67, both hemispheres 73.0
1891 Female, age 85, both hemispheres 69.8
2436 Male, age 74, both hemispheres 61.8
1867 Male, age 76, both hemispheres 28.3
2137 Male, age 80, left hemisphere 27.7
Parahippocampal cortex
nTPM: 42.0
2692 Male, age 74, both hemispheres 80.4
1990 Female, age 91, right hemisphere 50.3
2250 Female, age 67, right hemisphere 47.4
2622 Female, age 67, right hemisphere 44.6
2245 Female, age 91, both hemispheres 40.0
1850 Male, age 80, both hemispheres 39.6
2018 Male, age 76, both hemispheres 34.9
2532 Female, age 72, left hemisphere 28.0
1933 Female, age 85, both hemispheres 27.9
2693 Female, age 94, both hemispheres 27.0
Perirhinal gyrus
nTPM: 30.8
1847 Female, age 91, left hemisphere 36.2
1794 Male, age 80, right hemisphere 34.5
2848 Male, age 76, right hemisphere 30.5
2521 Female, age 94, right hemisphere 28.7
1841 Female, age 85, right hemisphere 24.3
Subiculum
nTPM: 65.2
2619 Male, age 74, both hemispheres 102.8
2729 Female, age 91, right hemisphere 87.6
2042 Male, age 76, both hemispheres 58.4
1901 Male, age 80, both hemispheres 52.6
2438 Female, age 94, left hemisphere 45.9
1977 Female, age 85, both hemispheres 43.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.6
Samples: 197

Max nTPM: 188.9
Min nTPM: 4.8
Std nTPM: 27.0
Median nTPM: 33.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 188.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 120.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 113.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 112.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 112.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 111.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 107.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 105.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 100.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 100.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 95.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 43.7
FF:10153-102I9 76 years, female 46.0
FF:10169-103B7 60 years, female 41.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.8
Pig sample Sample description nTPM
Subiculum
nTPM: 2.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 1.7
Sample A Female 2.5
Sample B Female 1.7
Sample C Male 2.1
Sample D Male 5.1
Dorsal hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 5.5
Min nTPM: 0.9
Sample A Female 5.5
Sample B Female 2.6
Sample C Male 5.5
Sample D Male 0.9
Entorhinal cortex
nTPM: 2.3
Samples: 4

Max nTPM: 5.4
Min nTPM: 0.6
Sample A Female 5.4
Sample B Female 1.5
Sample C Male 1.7
Sample D Male 0.6
Ventral hippocampus
nTPM: 4.9
Samples: 4

Max nTPM: 6.6
Min nTPM: 1.7
Sample A Female 6.6
Sample B Female 1.7
Sample C Male 5.9
Sample D Male 5.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.0
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.1
Sample A Male 3.1
Sample B Male 2.2
Sample C Female 1.6
Sample D Female 1.1
Hippocampal formation
nTPM: 3.3
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.0
Sample A Male 2.0
Sample B Male 3.2
Sample C Female 4.5
Sample D Female 3.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
73514695 Antisense, RP_051121_02_H07, Mouse strain C57BL/6J (56 days, male) 0.3

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