MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.2 nTPM
HPA Brain:124.2 nTPM
GTEx:52.2 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:6.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 124.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.6
2828 Female, age 72, unknown 100.4
2586 Male, age 75, left hemisphere 83.3
1870 Female, age 42, unknown 73.8
1827 Male, age 72, unknown 62.6
1833 Male, age 53, unknown 57.9
1830 Male, age 51, unknown 56.1
2666 Male, age 74, left hemisphere 48.9
2411 Female, age 72, unknown 41.4
2219 Male, age 76, both hemispheres 40.0
2019 Male, age 18, unknown 31.1
Dorsal raphe nucleus
nTPM: 67.0
2016 Female, age 72, unknown 95.7
1828 Male, age 53, unknown 68.7
2298 Female, age 72, unknown 66.1
2047 Male, age 72, unknown 53.2
2750 Male, age 76, both hemispheres 51.5
Inferior colliculus
nTPM: 54.7
2849 Male, age 72, unknown 75.4
1848 Female, age 42, unknown 59.1
1890 Male, age 53, unknown 43.0
2097 Female, age 72, unknown 41.1
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Periaquaductal grey, anterior
nTPM: 96.8
1795 Male, age 51, unknown 119.3
2502 Female, age 75, unknown 89.6
1947 Male, age 18, unknown 81.4
Periaquaductal grey, dorsal
nTPM: 103.5
2850 Male, age 76, both hemispheres 147.1
1831 Male, age 72, unknown 100.8
1840 Male, age 53, unknown 100.1
2464 Female, age 72, unknown 65.8
Periaquaductal grey, lateral
nTPM: 124.2
2053 Male, age 18, unknown 144.9
2140 Male, age 76, both hemispheres 130.8
2272 Male, age 74, both hemispheres 96.8
Pretectal area
nTPM: 70.0
2273 Male, age 74, both hemispheres 119.8
2825 Male, age 18, unknown 103.9
2407 Male, age 75, both hemispheres 83.6
2316 Male, age 76, right hemisphere 81.4
2224 Female, age 72, unknown 76.6
2667 Female, age 75, unknown 76.0
1815 Male, age 53, unknown 61.3
1944 Female, age 72, unknown 55.5
1816 Male, age 51, unknown 38.6
1817 Female, age 42, unknown 36.7
2007 Male, age 72, unknown 36.4
Red nucleus
nTPM: 56.8
2823 Male, age 76, right hemisphere 72.7
2725 Female, age 75, unknown 70.5
2503 Female, age 72, unknown 64.4
2769 Male, age 72, unknown 63.4
2227 Male, age 72, unknown 62.5
1904 Male, age 53, unknown 58.1
1865 Male, age 51, unknown 54.2
2588 Male, age 74, left hemisphere 54.2
1821 Female, age 72, unknown 49.6
1954 Female, age 42, unknown 47.5
2584 Male, age 75, left hemisphere 43.1
2785 Male, age 18, unknown 41.8
Substantia nigra
nTPM: 57.7
2699 Male, age 18, unknown 105.5
2590 Female, age 75, unknown 74.4
1851 Male, age 51, unknown 68.5
1916 Female, age 42, unknown 61.8
2409 Female, age 72, unknown 60.5
2583 Male, age 75, right hemisphere 47.0
2665 Male, age 74, both hemispheres 46.2
1941 Male, age 53, unknown 38.9
1889 Female, age 72, unknown 37.7
2241 Male, age 72, unknown 36.2
Superior colliculus
nTPM: 79.8
1995 Male, age 72, unknown 121.5
2664 Male, age 75, both hemispheres 120.8
1913 Female, age 42, unknown 105.6
1796 Male, age 53, unknown 90.9
1839 Male, age 51, unknown 82.1
2587 Male, age 74, left hemisphere 61.9
2087 Female, age 72, unknown 59.4
1895 Male, age 76, right hemisphere 58.3
2261 Male, age 18, unknown 58.0
2668 Female, age 75, unknown 39.9
Ventral tegmental area
nTPM: 60.0
2021 Male, age 53, unknown 78.8
1915 Female, age 42, unknown 72.1
1942 Male, age 51, unknown 59.7
2410 Female, age 72, unknown 52.1
2223 Female, age 72, unknown 51.6
2218 Male, age 76, both hemispheres 45.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.2
Samples: 139

Max nTPM: 268.7
Min nTPM: 3.7
Std nTPM: 37.3
Median nTPM: 42.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 268.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 205.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 193.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 147.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 145.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 138.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 115.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 112.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 111.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 106.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 99.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 31.7
Min nTPM: 13.3
Sample A Female 20.4
Sample B Female 31.7
Sample C Male 13.3
Sample D Male 19.1
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 36.4
Min nTPM: 6.1
Sample A Female 36.4
Sample B Female 6.1
Sample C Male 9.0
Sample D Male 10.8
Periaqueductal gray
nTPM: 15.4
Samples: 3

Max nTPM: 17.6
Min nTPM: 12.1
Sample B Female 12.1
Sample C Male 16.5
Sample D Male 17.6
Superior colliculi
nTPM: 11.0
Samples: 4

Max nTPM: 15.4
Min nTPM: 7.3
Sample A Female 15.4
Sample B Female 8.8
Sample C Male 7.3
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.6
Sample A Male 7.8
Sample B Male 6.6
Sample C Female 5.6
Sample D Female 6.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
73514695 Antisense, RP_051121_02_H07, Mouse strain C57BL/6J (56 days, male) 0.6

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