MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA Brain:18.7 nTPM
GTEx:42.3 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:43.2 nTPM
Mouse:22.9 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.2
2666 Male, age 74, left hemisphere 22.6
2586 Male, age 75, left hemisphere 22.5
2828 Female, age 72, unknown 19.3
2019 Male, age 18, unknown 17.8
2219 Male, age 76, both hemispheres 17.8
1870 Female, age 42, unknown 17.6
1833 Male, age 53, unknown 17.2
1830 Male, age 51, unknown 16.8
1827 Male, age 72, unknown 16.2
2411 Female, age 72, unknown 14.1
Dorsal raphe nucleus
nTPM: 14.9
2750 Male, age 76, both hemispheres 16.7
1828 Male, age 53, unknown 15.8
2047 Male, age 72, unknown 15.7
2016 Female, age 72, unknown 14.3
2298 Female, age 72, unknown 12.3
Inferior colliculus
nTPM: 14.8
2849 Male, age 72, unknown 17.5
1848 Female, age 42, unknown 15.1
1890 Male, age 53, unknown 14.4
2097 Female, age 72, unknown 12.1
Median raphe nucleus
nTPM: 17.3
2220 Male, age 76, midline 17.3
Periaquaductal grey, anterior
nTPM: 16.7
1795 Male, age 51, unknown 16.8
1947 Male, age 18, unknown 16.8
2502 Female, age 75, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 14.6
2850 Male, age 76, both hemispheres 19.7
1831 Male, age 72, unknown 14.3
1840 Male, age 53, unknown 12.5
2464 Female, age 72, unknown 12.1
Periaquaductal grey, lateral
nTPM: 15.2
2272 Male, age 74, both hemispheres 15.5
2140 Male, age 76, both hemispheres 15.2
2053 Male, age 18, unknown 14.8
Pretectal area
nTPM: 16.1
1817 Female, age 42, unknown 20.1
1816 Male, age 51, unknown 19.1
2007 Male, age 72, unknown 18.0
1815 Male, age 53, unknown 17.3
1944 Female, age 72, unknown 15.9
2825 Male, age 18, unknown 15.8
2224 Female, age 72, unknown 15.4
2407 Male, age 75, both hemispheres 14.4
2667 Female, age 75, unknown 14.0
2316 Male, age 76, right hemisphere 13.8
2273 Male, age 74, both hemispheres 13.5
Red nucleus
nTPM: 18.7
2725 Female, age 75, unknown 22.7
2588 Male, age 74, left hemisphere 20.6
1865 Male, age 51, unknown 20.0
2769 Male, age 72, unknown 18.9
1904 Male, age 53, unknown 18.6
2503 Female, age 72, unknown 18.5
2584 Male, age 75, left hemisphere 18.3
2823 Male, age 76, right hemisphere 18.2
1821 Female, age 72, unknown 17.9
2227 Male, age 72, unknown 17.0
2785 Male, age 18, unknown 16.9
1954 Female, age 42, unknown 16.6
Substantia nigra
nTPM: 17.7
1916 Female, age 42, unknown 21.2
2699 Male, age 18, unknown 20.0
1941 Male, age 53, unknown 19.3
2665 Male, age 74, both hemispheres 18.9
1851 Male, age 51, unknown 18.7
1889 Female, age 72, unknown 16.7
2590 Female, age 75, unknown 16.2
2409 Female, age 72, unknown 15.7
2583 Male, age 75, right hemisphere 15.4
2241 Male, age 72, unknown 14.5
Superior colliculus
nTPM: 16.5
2587 Male, age 74, left hemisphere 18.7
1796 Male, age 53, unknown 18.1
1913 Female, age 42, unknown 18.0
1995 Male, age 72, unknown 16.9
2261 Male, age 18, unknown 16.6
2668 Female, age 75, unknown 16.6
2664 Male, age 75, both hemispheres 15.5
2087 Female, age 72, unknown 15.4
1895 Male, age 76, right hemisphere 14.8
1839 Male, age 51, unknown 14.4
Ventral tegmental area
nTPM: 17.1
2223 Female, age 72, unknown 19.2
2218 Male, age 76, both hemispheres 18.3
1915 Female, age 42, unknown 18.2
2410 Female, age 72, unknown 16.6
1942 Male, age 51, unknown 15.2
2021 Male, age 53, unknown 14.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.3
Samples: 139

Max nTPM: 70.0
Min nTPM: 17.6
Std nTPM: 9.7
Median nTPM: 40.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 70.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 67.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 64.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 64.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 62.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 62.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 61.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 61.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 60.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.6
FF:10158-103A5 76 years, female 75.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.4
Samples: 4

Max nTPM: 47.7
Min nTPM: 33.9
Sample A Female 41.4
Sample B Female 33.9
Sample C Male 42.4
Sample D Male 47.7
Midbrain
nTPM: 43.2
Samples: 4

Max nTPM: 57.9
Min nTPM: 35.7
Sample A Female 57.9
Sample B Female 35.7
Sample C Male 41.7
Sample D Male 37.5
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 39.8
Min nTPM: 32.5
Sample B Female 32.5
Sample C Male 39.8
Sample D Male 35.2
Superior colliculi
nTPM: 40.6
Samples: 4

Max nTPM: 45.0
Min nTPM: 31.4
Sample A Female 45.0
Sample B Female 31.4
Sample C Male 41.9
Sample D Male 43.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 23.8
Min nTPM: 21.8
Sample A Male 23.6
Sample B Male 23.8
Sample C Female 22.6
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
68301658 Antisense, RP_041130_01_F02, Mouse strain C57BL/6J (56 days, male) 1.7

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