MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.7 nTPM
HPA Brain:8.0 nTPM
GTEx:8.7 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:10.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.7
1833 Male, age 53, unknown 6.3
1870 Female, age 42, unknown 6.3
2411 Female, age 72, unknown 6.2
2019 Male, age 18, unknown 6.1
2828 Female, age 72, unknown 6.1
2586 Male, age 75, left hemisphere 6.0
1827 Male, age 72, unknown 5.1
2219 Male, age 76, both hemispheres 5.0
1830 Male, age 51, unknown 4.9
2666 Male, age 74, left hemisphere 4.6
Dorsal raphe nucleus
nTPM: 6.9
2298 Female, age 72, unknown 8.9
2047 Male, age 72, unknown 6.8
2016 Female, age 72, unknown 6.6
1828 Male, age 53, unknown 6.2
2750 Male, age 76, both hemispheres 5.9
Inferior colliculus
nTPM: 6.1
1890 Male, age 53, unknown 6.8
2097 Female, age 72, unknown 6.3
1848 Female, age 42, unknown 5.9
2849 Male, age 72, unknown 5.4
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Periaquaductal grey, anterior
nTPM: 5.5
2502 Female, age 75, unknown 6.1
1795 Male, age 51, unknown 5.5
1947 Male, age 18, unknown 4.8
Periaquaductal grey, dorsal
nTPM: 6.4
2850 Male, age 76, both hemispheres 7.6
1840 Male, age 53, unknown 6.6
1831 Male, age 72, unknown 5.9
2464 Female, age 72, unknown 5.5
Periaquaductal grey, lateral
nTPM: 6.3
2140 Male, age 76, both hemispheres 6.7
2272 Male, age 74, both hemispheres 6.7
2053 Male, age 18, unknown 5.5
Pretectal area
nTPM: 5.8
2273 Male, age 74, both hemispheres 7.6
2316 Male, age 76, right hemisphere 7.2
1817 Female, age 42, unknown 6.2
2224 Female, age 72, unknown 6.1
2007 Male, age 72, unknown 5.9
1944 Female, age 72, unknown 5.8
2825 Male, age 18, unknown 5.5
2407 Male, age 75, both hemispheres 5.1
1815 Male, age 53, unknown 5.0
2667 Female, age 75, unknown 4.7
1816 Male, age 51, unknown 4.3
Red nucleus
nTPM: 6.0
2503 Female, age 72, unknown 7.7
1865 Male, age 51, unknown 6.8
2769 Male, age 72, unknown 6.6
1954 Female, age 42, unknown 6.4
2725 Female, age 75, unknown 6.4
1821 Female, age 72, unknown 6.3
2227 Male, age 72, unknown 6.1
1904 Male, age 53, unknown 6.0
2785 Male, age 18, unknown 5.4
2584 Male, age 75, left hemisphere 5.2
2823 Male, age 76, right hemisphere 5.2
2588 Male, age 74, left hemisphere 4.5
Substantia nigra
nTPM: 5.2
2665 Male, age 74, both hemispheres 6.2
2699 Male, age 18, unknown 6.2
1889 Female, age 72, unknown 5.9
1851 Male, age 51, unknown 5.8
2590 Female, age 75, unknown 5.7
1916 Female, age 42, unknown 5.3
2241 Male, age 72, unknown 5.3
2583 Male, age 75, right hemisphere 5.2
1941 Male, age 53, unknown 4.8
2409 Female, age 72, unknown 2.1
Superior colliculus
nTPM: 5.6
1995 Male, age 72, unknown 6.4
2261 Male, age 18, unknown 6.3
1796 Male, age 53, unknown 5.9
1839 Male, age 51, unknown 5.8
1913 Female, age 42, unknown 5.8
2587 Male, age 74, left hemisphere 5.4
1895 Male, age 76, right hemisphere 5.2
2664 Male, age 75, both hemispheres 5.1
2087 Female, age 72, unknown 5.0
2668 Female, age 75, unknown 5.0
Ventral tegmental area
nTPM: 6.1
1942 Male, age 51, unknown 6.6
1915 Female, age 42, unknown 6.2
2410 Female, age 72, unknown 6.1
2021 Male, age 53, unknown 5.9
2218 Male, age 76, both hemispheres 5.8
2223 Female, age 72, unknown 5.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.7
Samples: 139

Max nTPM: 19.2
Min nTPM: 3.7
Std nTPM: 3.2
Median nTPM: 8.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 19.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 18.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 18.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 17.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 16.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 16.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 16.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 15.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 15.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 15.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 14.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.4
FF:10158-103A5 76 years, female 10.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.5
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.5
Sample A Female 9.8
Sample B Female 9.4
Sample C Male 6.5
Sample D Male 8.2
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.3
Sample A Female 8.5
Sample B Female 8.3
Sample C Male 9.9
Sample D Male 10.1
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 8.6
Min nTPM: 6.8
Sample B Female 8.6
Sample C Male 8.5
Sample D Male 6.8
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 13.3
Min nTPM: 8.0
Sample A Female 13.3
Sample B Female 12.7
Sample C Male 8.0
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 11.2
Min nTPM: 10.6
Sample A Male 10.7
Sample B Male 10.6
Sample C Female 10.7
Sample D Female 11.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68445155 Antisense, RP_050111_02_H05, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org