MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:13.3 nTPM
GTEx:13.3 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:13.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2586 Male, age 75, left hemisphere 13.7
1827 Male, age 72, unknown 13.4
2411 Female, age 72, unknown 13.1
2666 Male, age 74, left hemisphere 12.9
2219 Male, age 76, both hemispheres 12.7
1833 Male, age 53, unknown 12.5
2019 Male, age 18, unknown 12.3
2828 Female, age 72, unknown 12.2
1830 Male, age 51, unknown 11.7
1870 Female, age 42, unknown 11.7
Dorsal raphe nucleus
nTPM: 12.2
2047 Male, age 72, unknown 13.9
1828 Male, age 53, unknown 12.2
2016 Female, age 72, unknown 12.0
2750 Male, age 76, both hemispheres 11.7
2298 Female, age 72, unknown 11.3
Inferior colliculus
nTPM: 12.0
1848 Female, age 42, unknown 12.4
1890 Male, age 53, unknown 11.9
2097 Female, age 72, unknown 11.8
2849 Male, age 72, unknown 11.7
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Periaquaductal grey, anterior
nTPM: 13.1
2502 Female, age 75, unknown 13.4
1947 Male, age 18, unknown 13.3
1795 Male, age 51, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 12.4
1840 Male, age 53, unknown 12.9
2850 Male, age 76, both hemispheres 12.5
1831 Male, age 72, unknown 12.1
2464 Female, age 72, unknown 12.1
Periaquaductal grey, lateral
nTPM: 12.1
2140 Male, age 76, both hemispheres 13.0
2053 Male, age 18, unknown 12.8
2272 Male, age 74, both hemispheres 10.7
Pretectal area
nTPM: 12.9
2007 Male, age 72, unknown 14.6
1816 Male, age 51, unknown 13.9
1815 Male, age 53, unknown 13.7
2407 Male, age 75, both hemispheres 13.4
1817 Female, age 42, unknown 13.3
1944 Female, age 72, unknown 12.9
2316 Male, age 76, right hemisphere 12.9
2667 Female, age 75, unknown 12.2
2825 Male, age 18, unknown 12.0
2224 Female, age 72, unknown 11.6
2273 Male, age 74, both hemispheres 11.3
Red nucleus
nTPM: 12.4
2588 Male, age 74, left hemisphere 14.3
1821 Female, age 72, unknown 13.7
2785 Male, age 18, unknown 13.0
1865 Male, age 51, unknown 12.7
2584 Male, age 75, left hemisphere 12.7
1904 Male, age 53, unknown 12.3
2227 Male, age 72, unknown 12.3
2503 Female, age 72, unknown 12.0
1954 Female, age 42, unknown 11.9
2769 Male, age 72, unknown 11.6
2823 Male, age 76, right hemisphere 11.2
2725 Female, age 75, unknown 11.1
Substantia nigra
nTPM: 13.3
1916 Female, age 42, unknown 15.0
2409 Female, age 72, unknown 14.6
2590 Female, age 75, unknown 13.4
2665 Male, age 74, both hemispheres 13.4
1851 Male, age 51, unknown 13.3
1941 Male, age 53, unknown 13.0
2699 Male, age 18, unknown 12.9
1889 Female, age 72, unknown 12.8
2583 Male, age 75, right hemisphere 12.5
2241 Male, age 72, unknown 12.0
Superior colliculus
nTPM: 12.4
2668 Female, age 75, unknown 13.9
1895 Male, age 76, right hemisphere 12.9
2587 Male, age 74, left hemisphere 12.7
2087 Female, age 72, unknown 12.6
2664 Male, age 75, both hemispheres 12.5
2261 Male, age 18, unknown 12.4
1796 Male, age 53, unknown 12.3
1839 Male, age 51, unknown 12.0
1913 Female, age 42, unknown 11.6
1995 Male, age 72, unknown 11.2
Ventral tegmental area
nTPM: 11.8
1915 Female, age 42, unknown 12.4
2410 Female, age 72, unknown 12.4
1942 Male, age 51, unknown 12.2
2223 Female, age 72, unknown 11.4
2021 Male, age 53, unknown 11.1
2218 Male, age 76, both hemispheres 11.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 24.9
Min nTPM: 6.0
Std nTPM: 3.6
Median nTPM: 12.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 24.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 24.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 23.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 23.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 22.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 20.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 20.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 19.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 16.1
Min nTPM: 14.0
Sample A Female 15.3
Sample B Female 14.0
Sample C Male 16.1
Sample D Male 14.8
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.4
Sample A Female 17.6
Sample B Female 14.4
Sample C Male 17.1
Sample D Male 15.2
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 14.6
Min nTPM: 12.5
Sample B Female 13.3
Sample C Male 14.6
Sample D Male 12.5
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 16.3
Min nTPM: 14.2
Sample A Female 15.2
Sample B Female 14.2
Sample C Male 16.3
Sample D Male 16.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.5
Sample A Male 13.3
Sample B Male 15.0
Sample C Female 13.2
Sample D Female 12.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68844833 Antisense, RP_050222_02_E08, Mouse strain C57BL/6J (56 days, male) 1.1

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