MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA Brain:54.6 nTPM
GTEx:46.5 nTPM
FANTOM5:48.7 Scaled Tags Per Million
Pig:61.6 nTPM
Mouse:88.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.9
2019 Male, age 18, unknown 59.7
2219 Male, age 76, both hemispheres 51.4
2586 Male, age 75, left hemisphere 51.3
2411 Female, age 72, unknown 49.6
1870 Female, age 42, unknown 49.0
1827 Male, age 72, unknown 47.6
2666 Male, age 74, left hemisphere 46.6
1830 Male, age 51, unknown 46.1
1833 Male, age 53, unknown 44.2
2828 Female, age 72, unknown 43.7
Dorsal raphe nucleus
nTPM: 48.5
2298 Female, age 72, unknown 55.0
1828 Male, age 53, unknown 51.5
2750 Male, age 76, both hemispheres 47.4
2047 Male, age 72, unknown 46.8
2016 Female, age 72, unknown 41.7
Inferior colliculus
nTPM: 52.0
2097 Female, age 72, unknown 56.9
2849 Male, age 72, unknown 52.5
1848 Female, age 42, unknown 52.3
1890 Male, age 53, unknown 46.3
Median raphe nucleus
nTPM: 48.8
2220 Male, age 76, midline 48.8
Periaquaductal grey, anterior
nTPM: 46.9
2502 Female, age 75, unknown 51.8
1947 Male, age 18, unknown 45.7
1795 Male, age 51, unknown 43.1
Periaquaductal grey, dorsal
nTPM: 48.9
1831 Male, age 72, unknown 53.7
1840 Male, age 53, unknown 51.5
2464 Female, age 72, unknown 47.5
2850 Male, age 76, both hemispheres 42.8
Periaquaductal grey, lateral
nTPM: 44.0
2140 Male, age 76, both hemispheres 45.6
2272 Male, age 74, both hemispheres 43.7
2053 Male, age 18, unknown 42.6
Pretectal area
nTPM: 53.2
2007 Male, age 72, unknown 66.2
1817 Female, age 42, unknown 65.6
1816 Male, age 51, unknown 58.5
1944 Female, age 72, unknown 56.0
1815 Male, age 53, unknown 54.5
2224 Female, age 72, unknown 52.9
2667 Female, age 75, unknown 50.5
2316 Male, age 76, right hemisphere 46.5
2825 Male, age 18, unknown 46.3
2273 Male, age 74, both hemispheres 45.1
2407 Male, age 75, both hemispheres 42.7
Red nucleus
nTPM: 46.4
1821 Female, age 72, unknown 53.4
2785 Male, age 18, unknown 53.1
2725 Female, age 75, unknown 50.9
2588 Male, age 74, left hemisphere 49.1
2584 Male, age 75, left hemisphere 47.3
2769 Male, age 72, unknown 44.5
2503 Female, age 72, unknown 44.4
1865 Male, age 51, unknown 43.9
1954 Female, age 42, unknown 43.8
2823 Male, age 76, right hemisphere 42.3
2227 Male, age 72, unknown 41.9
1904 Male, age 53, unknown 41.7
Substantia nigra
nTPM: 54.6
1941 Male, age 53, unknown 70.0
1916 Female, age 42, unknown 59.8
1889 Female, age 72, unknown 59.1
2241 Male, age 72, unknown 58.7
2665 Male, age 74, both hemispheres 56.8
1851 Male, age 51, unknown 53.5
2409 Female, age 72, unknown 49.7
2699 Male, age 18, unknown 48.2
2590 Female, age 75, unknown 45.1
2583 Male, age 75, right hemisphere 44.9
Superior colliculus
nTPM: 48.0
2087 Female, age 72, unknown 54.6
1895 Male, age 76, right hemisphere 52.0
2587 Male, age 74, left hemisphere 51.3
2664 Male, age 75, both hemispheres 50.6
1839 Male, age 51, unknown 49.3
2668 Female, age 75, unknown 48.9
1796 Male, age 53, unknown 48.0
2261 Male, age 18, unknown 45.5
1913 Female, age 42, unknown 41.6
1995 Male, age 72, unknown 37.7
Ventral tegmental area
nTPM: 49.6
2410 Female, age 72, unknown 52.7
2218 Male, age 76, both hemispheres 52.6
1942 Male, age 51, unknown 52.5
1915 Female, age 42, unknown 51.0
2223 Female, age 72, unknown 44.4
2021 Male, age 53, unknown 44.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.5
Samples: 139

Max nTPM: 128.1
Min nTPM: 30.6
Std nTPM: 12.3
Median nTPM: 43.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 128.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 101.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 85.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 68.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 66.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 65.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 60.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 59.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 59.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.7
FF:10158-103A5 76 years, female 48.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.5
Samples: 4

Max nTPM: 54.0
Min nTPM: 36.1
Sample A Female 54.0
Sample B Female 37.0
Sample C Male 51.0
Sample D Male 36.1
Midbrain
nTPM: 52.3
Samples: 4

Max nTPM: 61.0
Min nTPM: 44.9
Sample A Female 46.6
Sample B Female 44.9
Sample C Male 61.0
Sample D Male 56.7
Periaqueductal gray
nTPM: 40.4
Samples: 3

Max nTPM: 44.3
Min nTPM: 36.7
Sample B Female 40.1
Sample C Male 44.3
Sample D Male 36.7
Superior colliculi
nTPM: 61.6
Samples: 4

Max nTPM: 71.1
Min nTPM: 47.4
Sample A Female 68.4
Sample B Female 47.4
Sample C Male 71.1
Sample D Male 59.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.9
Samples: 4

Max nTPM: 90.8
Min nTPM: 85.3
Sample A Male 85.3
Sample B Male 90.7
Sample C Female 90.8
Sample D Female 88.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67978685 Antisense, RP_040923_01_E10, Mouse strain C57BL/6J (56 days, male) 0.0

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