MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:52.2 nTPM
GTEx:11.7 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:22.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.8
1833 Male, age 53, unknown 54.2
2411 Female, age 72, unknown 51.7
1830 Male, age 51, unknown 48.1
1870 Female, age 42, unknown 47.2
2666 Male, age 74, left hemisphere 47.2
2219 Male, age 76, both hemispheres 46.7
2586 Male, age 75, left hemisphere 45.3
2828 Female, age 72, unknown 43.4
1827 Male, age 72, unknown 43.0
2019 Male, age 18, unknown 41.7
Dorsal raphe nucleus
nTPM: 49.3
2016 Female, age 72, unknown 58.8
1828 Male, age 53, unknown 52.1
2047 Male, age 72, unknown 50.9
2298 Female, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 41.7
Inferior colliculus
nTPM: 49.3
2849 Male, age 72, unknown 53.8
1848 Female, age 42, unknown 51.4
1890 Male, age 53, unknown 49.9
2097 Female, age 72, unknown 42.0
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Periaquaductal grey, anterior
nTPM: 47.7
1947 Male, age 18, unknown 50.6
1795 Male, age 51, unknown 48.2
2502 Female, age 75, unknown 44.3
Periaquaductal grey, dorsal
nTPM: 49.2
1831 Male, age 72, unknown 50.7
1840 Male, age 53, unknown 50.0
2850 Male, age 76, both hemispheres 48.3
2464 Female, age 72, unknown 47.6
Periaquaductal grey, lateral
nTPM: 47.1
2053 Male, age 18, unknown 51.0
2140 Male, age 76, both hemispheres 50.2
2272 Male, age 74, both hemispheres 40.1
Pretectal area
nTPM: 44.4
2316 Male, age 76, right hemisphere 50.9
2407 Male, age 75, both hemispheres 50.7
2825 Male, age 18, unknown 50.4
2224 Female, age 72, unknown 46.3
1944 Female, age 72, unknown 43.1
2273 Male, age 74, both hemispheres 42.9
2667 Female, age 75, unknown 42.1
1817 Female, age 42, unknown 41.3
1815 Male, age 53, unknown 40.9
2007 Male, age 72, unknown 40.6
1816 Male, age 51, unknown 39.0
Red nucleus
nTPM: 48.4
1954 Female, age 42, unknown 58.2
1865 Male, age 51, unknown 50.3
2823 Male, age 76, right hemisphere 49.5
2227 Male, age 72, unknown 48.8
2588 Male, age 74, left hemisphere 48.6
1904 Male, age 53, unknown 48.1
2769 Male, age 72, unknown 47.5
2584 Male, age 75, left hemisphere 47.2
2503 Female, age 72, unknown 47.1
1821 Female, age 72, unknown 46.7
2725 Female, age 75, unknown 45.8
2785 Male, age 18, unknown 43.3
Substantia nigra
nTPM: 52.2
2409 Female, age 72, unknown 71.2
2699 Male, age 18, unknown 55.9
2241 Male, age 72, unknown 55.0
2590 Female, age 75, unknown 51.3
2583 Male, age 75, right hemisphere 50.9
2665 Male, age 74, both hemispheres 50.8
1916 Female, age 42, unknown 49.8
1851 Male, age 51, unknown 46.5
1941 Male, age 53, unknown 45.7
1889 Female, age 72, unknown 44.9
Superior colliculus
nTPM: 47.6
1839 Male, age 51, unknown 58.7
2668 Female, age 75, unknown 56.9
1895 Male, age 76, right hemisphere 47.6
2664 Male, age 75, both hemispheres 47.0
2587 Male, age 74, left hemisphere 46.9
1913 Female, age 42, unknown 45.2
1995 Male, age 72, unknown 45.2
1796 Male, age 53, unknown 44.5
2087 Female, age 72, unknown 42.8
2261 Male, age 18, unknown 41.6
Ventral tegmental area
nTPM: 47.5
1915 Female, age 42, unknown 49.0
2218 Male, age 76, both hemispheres 48.7
2021 Male, age 53, unknown 48.6
2410 Female, age 72, unknown 48.4
2223 Female, age 72, unknown 45.7
1942 Male, age 51, unknown 44.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 139

Max nTPM: 19.4
Min nTPM: 6.8
Std nTPM: 2.1
Median nTPM: 11.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 17.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 16.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 16.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 15.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 15.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 15.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 15.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 25.7
Min nTPM: 19.7
Sample A Female 25.7
Sample B Female 21.8
Sample C Male 22.7
Sample D Male 19.7
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.4
Sample A Female 23.3
Sample B Female 24.0
Sample C Male 17.4
Sample D Male 21.0
Periaqueductal gray
nTPM: 21.7
Samples: 3

Max nTPM: 22.4
Min nTPM: 20.6
Sample B Female 22.0
Sample C Male 22.4
Sample D Male 20.6
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.0
Sample A Female 22.0
Sample B Female 19.4
Sample C Male 18.0
Sample D Male 19.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 20.2
Sample A Male 20.2
Sample B Male 22.9
Sample C Female 22.3
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69735508 Antisense, RP_050503_02_H12, Mouse strain C57BL/6J (56 days, male) 0.4

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