MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.0 nTPM
HPA Brain:25.5 nTPM
GTEx:33.0 nTPM
FANTOM5:111.8 Scaled Tags Per Million
Pig:36.3 nTPM
Mouse:19.4 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.3
2411 Female, age 72, unknown 25.4
2586 Male, age 75, left hemisphere 24.6
1827 Male, age 72, unknown 24.4
2828 Female, age 72, unknown 22.6
2019 Male, age 18, unknown 22.3
1870 Female, age 42, unknown 21.2
2666 Male, age 74, left hemisphere 16.8
1833 Male, age 53, unknown 16.6
1830 Male, age 51, unknown 16.5
2219 Male, age 76, both hemispheres 12.3
Dorsal raphe nucleus
nTPM: 20.9
2298 Female, age 72, unknown 25.1
1828 Male, age 53, unknown 21.2
2016 Female, age 72, unknown 21.1
2047 Male, age 72, unknown 19.5
2750 Male, age 76, both hemispheres 17.6
Inferior colliculus
nTPM: 20.8
2097 Female, age 72, unknown 24.7
1848 Female, age 42, unknown 21.3
1890 Male, age 53, unknown 20.6
2849 Male, age 72, unknown 16.7
Median raphe nucleus
nTPM: 16.2
2220 Male, age 76, midline 16.2
Periaquaductal grey, anterior
nTPM: 22.2
2502 Female, age 75, unknown 24.0
1947 Male, age 18, unknown 22.8
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 18.0
1840 Male, age 53, unknown 22.6
1831 Male, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 16.7
2464 Female, age 72, unknown 14.6
Periaquaductal grey, lateral
nTPM: 17.2
2053 Male, age 18, unknown 18.6
2140 Male, age 76, both hemispheres 16.8
2272 Male, age 74, both hemispheres 16.1
Pretectal area
nTPM: 21.6
1944 Female, age 72, unknown 27.6
2007 Male, age 72, unknown 27.5
1816 Male, age 51, unknown 27.3
1817 Female, age 42, unknown 26.9
1815 Male, age 53, unknown 25.7
2667 Female, age 75, unknown 21.5
2825 Male, age 18, unknown 19.4
2224 Female, age 72, unknown 16.3
2407 Male, age 75, both hemispheres 15.9
2273 Male, age 74, both hemispheres 15.4
2316 Male, age 76, right hemisphere 14.4
Red nucleus
nTPM: 19.7
2588 Male, age 74, left hemisphere 27.7
1821 Female, age 72, unknown 27.6
1865 Male, age 51, unknown 21.2
1904 Male, age 53, unknown 20.2
2503 Female, age 72, unknown 18.9
1954 Female, age 42, unknown 18.5
2785 Male, age 18, unknown 18.2
2725 Female, age 75, unknown 17.7
2584 Male, age 75, left hemisphere 17.5
2769 Male, age 72, unknown 16.9
2823 Male, age 76, right hemisphere 16.1
2227 Male, age 72, unknown 15.9
Substantia nigra
nTPM: 25.5
1889 Female, age 72, unknown 30.3
2241 Male, age 72, unknown 29.4
2409 Female, age 72, unknown 29.2
1851 Male, age 51, unknown 28.5
1916 Female, age 42, unknown 27.6
2590 Female, age 75, unknown 23.6
2665 Male, age 74, both hemispheres 22.8
2699 Male, age 18, unknown 21.9
1941 Male, age 53, unknown 21.3
2583 Male, age 75, right hemisphere 21.0
Superior colliculus
nTPM: 20.9
2587 Male, age 74, left hemisphere 23.6
2261 Male, age 18, unknown 22.1
2668 Female, age 75, unknown 22.1
1796 Male, age 53, unknown 21.9
1895 Male, age 76, right hemisphere 20.7
2087 Female, age 72, unknown 20.3
1913 Female, age 42, unknown 20.1
1995 Male, age 72, unknown 19.9
1839 Male, age 51, unknown 19.1
2664 Male, age 75, both hemispheres 18.7
Ventral tegmental area
nTPM: 21.5
2410 Female, age 72, unknown 30.6
1915 Female, age 42, unknown 23.3
2218 Male, age 76, both hemispheres 20.8
1942 Male, age 51, unknown 19.2
2223 Female, age 72, unknown 17.7
2021 Male, age 53, unknown 17.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.0
Samples: 139

Max nTPM: 43.4
Min nTPM: 20.9
Std nTPM: 3.9
Median nTPM: 32.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 43.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 41.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 41.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 40.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 40.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 39.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.8
FF:10158-103A5 76 years, female 111.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.5
Samples: 4

Max nTPM: 37.9
Min nTPM: 30.7
Sample A Female 37.9
Sample B Female 32.8
Sample C Male 36.4
Sample D Male 30.7
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 38.7
Min nTPM: 32.1
Sample A Female 32.1
Sample B Female 35.9
Sample C Male 38.5
Sample D Male 38.7
Periaqueductal gray
nTPM: 35.2
Samples: 3

Max nTPM: 36.8
Min nTPM: 32.8
Sample B Female 36.1
Sample C Male 36.8
Sample D Male 32.8
Superior colliculi
nTPM: 36.3
Samples: 4

Max nTPM: 40.4
Min nTPM: 31.5
Sample A Female 38.8
Sample B Female 31.5
Sample C Male 40.4
Sample D Male 34.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 20.7
Min nTPM: 18.6
Sample A Male 19.3
Sample B Male 19.1
Sample C Female 20.7
Sample D Female 18.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
68443184 Antisense, RP_050111_01_E06, Mouse strain C57BL/6J (56 days, male) 7.0

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