MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:43.3 nTPM
GTEx:16.6 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:22.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.8
1830 Male, age 51, unknown 43.2
2019 Male, age 18, unknown 43.1
1833 Male, age 53, unknown 42.7
2411 Female, age 72, unknown 39.6
1870 Female, age 42, unknown 38.4
2666 Male, age 74, left hemisphere 36.9
2219 Male, age 76, both hemispheres 32.5
2828 Female, age 72, unknown 31.6
2586 Male, age 75, left hemisphere 30.6
1827 Male, age 72, unknown 29.4
Dorsal raphe nucleus
nTPM: 31.9
2750 Male, age 76, both hemispheres 38.7
2016 Female, age 72, unknown 33.4
1828 Male, age 53, unknown 31.4
2298 Female, age 72, unknown 29.1
2047 Male, age 72, unknown 26.9
Inferior colliculus
nTPM: 28.6
1890 Male, age 53, unknown 32.4
1848 Female, age 42, unknown 28.8
2849 Male, age 72, unknown 27.7
2097 Female, age 72, unknown 25.3
Median raphe nucleus
nTPM: 36.6
2220 Male, age 76, midline 36.6
Periaquaductal grey, anterior
nTPM: 26.2
2502 Female, age 75, unknown 29.0
1795 Male, age 51, unknown 25.3
1947 Male, age 18, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 29.4
2850 Male, age 76, both hemispheres 33.4
1831 Male, age 72, unknown 31.4
2464 Female, age 72, unknown 29.6
1840 Male, age 53, unknown 23.1
Periaquaductal grey, lateral
nTPM: 32.5
2272 Male, age 74, both hemispheres 33.5
2140 Male, age 76, both hemispheres 33.2
2053 Male, age 18, unknown 30.9
Pretectal area
nTPM: 30.1
1815 Male, age 53, unknown 38.3
2007 Male, age 72, unknown 34.7
2407 Male, age 75, both hemispheres 34.7
1817 Female, age 42, unknown 32.9
2667 Female, age 75, unknown 31.9
2273 Male, age 74, both hemispheres 31.6
2316 Male, age 76, right hemisphere 29.4
1944 Female, age 72, unknown 25.9
2224 Female, age 72, unknown 25.9
2825 Male, age 18, unknown 25.8
1816 Male, age 51, unknown 20.4
Red nucleus
nTPM: 43.3
1904 Male, age 53, unknown 50.2
1865 Male, age 51, unknown 49.8
2785 Male, age 18, unknown 48.7
2823 Male, age 76, right hemisphere 47.4
2588 Male, age 74, left hemisphere 43.8
2503 Female, age 72, unknown 43.2
1821 Female, age 72, unknown 43.1
2769 Male, age 72, unknown 43.1
1954 Female, age 42, unknown 42.5
2227 Male, age 72, unknown 41.9
2584 Male, age 75, left hemisphere 34.8
2725 Female, age 75, unknown 31.5
Substantia nigra
nTPM: 38.2
2699 Male, age 18, unknown 49.2
1851 Male, age 51, unknown 43.8
2583 Male, age 75, right hemisphere 41.6
2241 Male, age 72, unknown 39.8
2590 Female, age 75, unknown 38.9
1916 Female, age 42, unknown 38.6
2409 Female, age 72, unknown 37.4
1889 Female, age 72, unknown 34.0
1941 Male, age 53, unknown 29.6
2665 Male, age 74, both hemispheres 28.8
Superior colliculus
nTPM: 31.4
1913 Female, age 42, unknown 37.7
1995 Male, age 72, unknown 35.6
1895 Male, age 76, right hemisphere 34.7
2668 Female, age 75, unknown 34.4
2587 Male, age 74, left hemisphere 33.1
2664 Male, age 75, both hemispheres 30.8
1839 Male, age 51, unknown 30.1
1796 Male, age 53, unknown 27.6
2087 Female, age 72, unknown 26.5
2261 Male, age 18, unknown 23.0
Ventral tegmental area
nTPM: 37.2
2410 Female, age 72, unknown 41.6
2218 Male, age 76, both hemispheres 39.3
2223 Female, age 72, unknown 38.4
1942 Male, age 51, unknown 35.8
1915 Female, age 42, unknown 34.7
2021 Male, age 53, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 139

Max nTPM: 51.0
Min nTPM: 5.7
Std nTPM: 6.6
Median nTPM: 15.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 51.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 36.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 32.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 31.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 31.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 30.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 27.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 26.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.3
FF:10158-103A5 76 years, female 50.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 9.0
Min nTPM: 3.9
Sample A Female 9.0
Sample B Female 5.5
Sample C Male 9.0
Sample D Male 3.9
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 10.9
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 5.6
Sample C Male 10.9
Sample D Male 10.7
Periaqueductal gray
nTPM: 5.6
Samples: 3

Max nTPM: 6.7
Min nTPM: 4.7
Sample B Female 5.4
Sample C Male 6.7
Sample D Male 4.7
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.2
Sample A Female 8.8
Sample B Female 6.2
Sample C Male 11.6
Sample D Male 7.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 24.1
Min nTPM: 20.6
Sample A Male 20.6
Sample B Male 23.6
Sample C Female 22.7
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
67765723 Antisense, RP_040916_01_F08, Mouse strain C57BL/6J (56 days, male) 0.8
77371807 Antisense, RP_070116_01_C12, Mouse strain C57BL/6J (56 days, male) 0.8
70919316 Antisense, RP_050713_01_B01, Mouse strain C57BL/6J (56 days, male) 0.0

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