MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:24.9 nTPM
GTEx:15.2 nTPM
FANTOM5:65.2 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:25.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.6
2019 Male, age 18, unknown 27.6
2411 Female, age 72, unknown 24.5
1870 Female, age 42, unknown 23.9
1827 Male, age 72, unknown 22.2
2666 Male, age 74, left hemisphere 21.3
1833 Male, age 53, unknown 20.9
2828 Female, age 72, unknown 20.9
1830 Male, age 51, unknown 20.3
2219 Male, age 76, both hemispheres 18.6
2586 Male, age 75, left hemisphere 15.7
Dorsal raphe nucleus
nTPM: 23.7
2298 Female, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 24.5
1828 Male, age 53, unknown 23.2
2047 Male, age 72, unknown 22.4
2016 Female, age 72, unknown 21.4
Inferior colliculus
nTPM: 22.7
2097 Female, age 72, unknown 25.1
1890 Male, age 53, unknown 24.0
1848 Female, age 42, unknown 21.7
2849 Male, age 72, unknown 20.2
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 23.8
1947 Male, age 18, unknown 25.5
2502 Female, age 75, unknown 24.2
1795 Male, age 51, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 21.5
2850 Male, age 76, both hemispheres 23.2
2464 Female, age 72, unknown 22.5
1840 Male, age 53, unknown 20.4
1831 Male, age 72, unknown 19.9
Periaquaductal grey, lateral
nTPM: 21.4
2140 Male, age 76, both hemispheres 22.8
2053 Male, age 18, unknown 20.7
2272 Male, age 74, both hemispheres 20.7
Pretectal area
nTPM: 24.6
1817 Female, age 42, unknown 29.6
1816 Male, age 51, unknown 28.3
1815 Male, age 53, unknown 28.1
2007 Male, age 72, unknown 28.1
1944 Female, age 72, unknown 26.2
2273 Male, age 74, both hemispheres 24.2
2224 Female, age 72, unknown 23.9
2316 Male, age 76, right hemisphere 22.8
2667 Female, age 75, unknown 21.5
2407 Male, age 75, both hemispheres 19.0
2825 Male, age 18, unknown 19.0
Red nucleus
nTPM: 22.7
2725 Female, age 75, unknown 27.2
1821 Female, age 72, unknown 27.1
1865 Male, age 51, unknown 24.2
2823 Male, age 76, right hemisphere 23.3
1904 Male, age 53, unknown 23.2
2503 Female, age 72, unknown 22.7
2785 Male, age 18, unknown 22.4
1954 Female, age 42, unknown 21.7
2769 Male, age 72, unknown 20.8
2588 Male, age 74, left hemisphere 20.4
2227 Male, age 72, unknown 20.3
2584 Male, age 75, left hemisphere 19.0
Substantia nigra
nTPM: 24.9
2241 Male, age 72, unknown 32.0
1916 Female, age 42, unknown 28.9
1851 Male, age 51, unknown 27.3
1889 Female, age 72, unknown 27.2
1941 Male, age 53, unknown 23.9
2665 Male, age 74, both hemispheres 23.9
2590 Female, age 75, unknown 23.0
2699 Male, age 18, unknown 21.2
2583 Male, age 75, right hemisphere 20.8
2409 Female, age 72, unknown 20.5
Superior colliculus
nTPM: 22.2
2087 Female, age 72, unknown 25.2
2261 Male, age 18, unknown 24.5
2587 Male, age 74, left hemisphere 23.8
1895 Male, age 76, right hemisphere 23.4
1913 Female, age 42, unknown 22.0
2668 Female, age 75, unknown 21.9
1995 Male, age 72, unknown 21.7
1796 Male, age 53, unknown 21.2
1839 Male, age 51, unknown 20.1
2664 Male, age 75, both hemispheres 18.3
Ventral tegmental area
nTPM: 23.6
2410 Female, age 72, unknown 26.1
2218 Male, age 76, both hemispheres 24.8
1915 Female, age 42, unknown 24.2
2223 Female, age 72, unknown 22.9
2021 Male, age 53, unknown 22.2
1942 Male, age 51, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 139

Max nTPM: 27.5
Min nTPM: 7.8
Std nTPM: 3.3
Median nTPM: 14.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 27.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 25.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 24.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 23.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 23.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 22.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 22.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 21.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 20.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 19.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.2
FF:10158-103A5 76 years, female 65.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.2
Samples: 4

Max nTPM: 28.0
Min nTPM: 18.9
Sample A Female 28.0
Sample B Female 22.6
Sample C Male 23.3
Sample D Male 18.9
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 36.3
Min nTPM: 24.6
Sample A Female 29.4
Sample B Female 24.6
Sample C Male 36.3
Sample D Male 31.3
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 22.4
Min nTPM: 19.2
Sample B Female 21.3
Sample C Male 22.4
Sample D Male 19.2
Superior colliculi
nTPM: 30.8
Samples: 4

Max nTPM: 35.8
Min nTPM: 26.2
Sample A Female 32.3
Sample B Female 26.2
Sample C Male 35.8
Sample D Male 29.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 27.6
Min nTPM: 24.0
Sample A Male 24.0
Sample B Male 26.6
Sample C Female 27.6
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
67765729 Antisense, RP_040916_01_G02, Mouse strain C57BL/6J (56 days, male) 0.5

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