HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:18.3 nTPM
HPA Brain:45.2 nTPM
GTEx:18.3 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:18.6 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022011
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Hippocampus
nTPM: 45.2
2148 Female, age 91, left hemisphere 50.2
1911 Female, age 85, right hemisphere 49.8
2529 Female, age 94, left hemisphere 48.2
1855 Male, age 76, left hemisphere 45.7
1898 Male, age 80, left hemisphere 43.9
2621 Female, age 67, right hemisphere 33.2
Dentate gyrus
nTPM: 33.4
2528 Male, age 74, both hemispheres 47.3
2246 Female, age 85, both hemispheres 35.5
2010 Male, age 76, both hemispheres 32.8
1927 Female, age 91, both hemispheres 30.2
2530 Female, age 94, left hemisphere 28.6
2531 Female, age 67, both hemispheres 26.0
Entorhinal gyrus
nTPM: 30.8
2117 Female, age 91, right hemisphere 47.6
1938 Female, age 85, left hemisphere 33.8
2686 Male, age 75, right hemisphere 33.7
1787 Male, age 76, left hemisphere 28.6
2764 Male, age 80, right hemisphere 22.7
2613 Female, age 94, left hemisphere 18.3
Hippocampus, CA1
nTPM: 38.3
1873 Female, age 85, both hemispheres 49.4
2082 Female, age 91, right hemisphere 44.9
2527 Male, age 74, both hemispheres 44.8
2045 Male, age 76, both hemispheres 29.9
2749 Male, age 80, left hemisphere 22.7
Hippocampus, CA2
nTPM: 34.6
2113 Female, age 91, right hemisphere 50.7
2249 Male, age 74, both hemispheres 43.5
1940 Female, age 85, left hemisphere 33.5
1963 Male, age 80, left hemisphere 28.8
2437 Female, age 94, left hemisphere 26.9
1892 Male, age 76, both hemispheres 24.5
Hippocampus, CA3
nTPM: 33.6
1891 Female, age 85, both hemispheres 45.1
2861 Female, age 67, both hemispheres 36.2
2620 Female, age 94, left hemisphere 34.6
2436 Male, age 74, both hemispheres 33.3
1867 Male, age 76, both hemispheres 28.3
2137 Male, age 80, left hemisphere 24.4
Parahippocampal cortex
nTPM: 33.9
2692 Male, age 74, both hemispheres 41.1
2245 Female, age 91, both hemispheres 39.4
2250 Female, age 67, right hemisphere 37.7
2622 Female, age 67, right hemisphere 37.6
1933 Female, age 85, both hemispheres 35.2
1990 Female, age 91, right hemisphere 34.9
2018 Male, age 76, both hemispheres 31.0
1850 Male, age 80, both hemispheres 29.4
2693 Female, age 94, both hemispheres 27.0
2532 Female, age 72, left hemisphere 25.7
Perirhinal gyrus
nTPM: 29.2
1847 Female, age 91, left hemisphere 36.7
1841 Female, age 85, right hemisphere 32.1
1794 Male, age 80, right hemisphere 28.4
2521 Female, age 94, right hemisphere 24.9
2848 Male, age 76, right hemisphere 23.7
Subiculum
nTPM: 39.2
2729 Female, age 91, right hemisphere 61.3
2619 Male, age 74, both hemispheres 42.1
2042 Male, age 76, both hemispheres 36.1
2438 Female, age 94, left hemisphere 34.5
1901 Male, age 80, both hemispheres 31.2
1977 Female, age 85, both hemispheres 30.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.3
Samples: 197

Max nTPM: 49.8
Min nTPM: 0.8
Std nTPM: 8.9
Median nTPM: 17.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 49.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 49.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 44.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 43.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 41.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 40.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 39.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 38.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 37.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 36.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 35.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.0
FF:10153-102I9 76 years, female 54.1
FF:10169-103B7 60 years, female 49.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Subiculum
nTPM: 5.5
Samples: 4

Max nTPM: 9.3
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 9.3
Sample C Male 4.8
Sample D Male 4.6
Dorsal hippocampus
nTPM: 7.4
Samples: 4

Max nTPM: 11.0
Min nTPM: 4.9
Sample A Female 7.0
Sample B Female 11.0
Sample C Male 6.5
Sample D Male 4.9
Entorhinal cortex
nTPM: 4.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 2.8
Sample A Female 3.3
Sample B Female 8.0
Sample C Male 4.6
Sample D Male 2.8
Ventral hippocampus
nTPM: 6.6
Samples: 4

Max nTPM: 10.1
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 10.1
Sample C Male 5.3
Sample D Male 6.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.3
Sample A Male 18.2
Sample B Male 20.2
Sample C Female 19.8
Sample D Female 16.3
Hippocampal formation
nTPM: 18.5
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.1
Sample A Male 18.8
Sample B Male 17.3
Sample C Female 17.1
Sample D Female 20.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
71789849 Antisense, RP_050921_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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