MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.8 nTPM
HPA Brain:57.5 nTPM
GTEx:29.8 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:27.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.6
2828 Female, age 72, unknown 59.1
2586 Male, age 75, left hemisphere 57.0
2666 Male, age 74, left hemisphere 52.9
1827 Male, age 72, unknown 42.3
1833 Male, age 53, unknown 39.2
1870 Female, age 42, unknown 38.9
2411 Female, age 72, unknown 36.8
1830 Male, age 51, unknown 32.3
2219 Male, age 76, both hemispheres 30.7
2019 Male, age 18, unknown 27.2
Dorsal raphe nucleus
nTPM: 51.5
2016 Female, age 72, unknown 70.9
2047 Male, age 72, unknown 54.3
1828 Male, age 53, unknown 52.8
2298 Female, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 36.0
Inferior colliculus
nTPM: 45.4
1848 Female, age 42, unknown 60.4
2849 Male, age 72, unknown 43.5
1890 Male, age 53, unknown 41.7
2097 Female, age 72, unknown 36.0
Median raphe nucleus
nTPM: 44.9
2220 Male, age 76, midline 44.9
Periaquaductal grey, anterior
nTPM: 44.9
1795 Male, age 51, unknown 47.8
1947 Male, age 18, unknown 43.8
2502 Female, age 75, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 52.1
2850 Male, age 76, both hemispheres 56.0
1831 Male, age 72, unknown 55.4
1840 Male, age 53, unknown 51.9
2464 Female, age 72, unknown 45.0
Periaquaductal grey, lateral
nTPM: 51.1
2053 Male, age 18, unknown 63.8
2140 Male, age 76, both hemispheres 49.7
2272 Male, age 74, both hemispheres 39.7
Pretectal area
nTPM: 46.0
2224 Female, age 72, unknown 52.3
2316 Male, age 76, right hemisphere 51.4
1816 Male, age 51, unknown 49.3
1817 Female, age 42, unknown 49.2
2825 Male, age 18, unknown 49.2
1815 Male, age 53, unknown 47.9
2273 Male, age 74, both hemispheres 47.4
2667 Female, age 75, unknown 47.1
2407 Male, age 75, both hemispheres 45.1
1944 Female, age 72, unknown 39.4
2007 Male, age 72, unknown 28.0
Red nucleus
nTPM: 38.7
2503 Female, age 72, unknown 52.1
1904 Male, age 53, unknown 43.6
1821 Female, age 72, unknown 43.3
2227 Male, age 72, unknown 43.1
2769 Male, age 72, unknown 42.3
1954 Female, age 42, unknown 40.9
2588 Male, age 74, left hemisphere 40.5
1865 Male, age 51, unknown 36.5
2823 Male, age 76, right hemisphere 36.1
2785 Male, age 18, unknown 29.2
2725 Female, age 75, unknown 28.6
2584 Male, age 75, left hemisphere 27.6
Substantia nigra
nTPM: 57.5
2699 Male, age 18, unknown 92.9
2665 Male, age 74, both hemispheres 70.1
1851 Male, age 51, unknown 58.4
1916 Female, age 42, unknown 58.2
2590 Female, age 75, unknown 55.9
2409 Female, age 72, unknown 53.6
2241 Male, age 72, unknown 51.0
2583 Male, age 75, right hemisphere 48.4
1889 Female, age 72, unknown 46.0
1941 Male, age 53, unknown 40.4
Superior colliculus
nTPM: 50.1
2668 Female, age 75, unknown 66.0
2664 Male, age 75, both hemispheres 59.4
1995 Male, age 72, unknown 58.6
1839 Male, age 51, unknown 51.6
2087 Female, age 72, unknown 50.2
2587 Male, age 74, left hemisphere 48.8
1796 Male, age 53, unknown 46.8
1913 Female, age 42, unknown 43.2
2261 Male, age 18, unknown 42.2
1895 Male, age 76, right hemisphere 34.2
Ventral tegmental area
nTPM: 49.0
2021 Male, age 53, unknown 61.7
1942 Male, age 51, unknown 50.0
1915 Female, age 42, unknown 49.6
2410 Female, age 72, unknown 48.7
2218 Male, age 76, both hemispheres 42.8
2223 Female, age 72, unknown 41.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.8
Samples: 139

Max nTPM: 85.4
Min nTPM: 3.1
Std nTPM: 16.4
Median nTPM: 26.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 85.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 77.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 67.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 67.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 67.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 59.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 59.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 59.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 58.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 57.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.9
FF:10158-103A5 76 years, female 30.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.1
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.8
Sample A Female 9.9
Sample B Female 12.3
Sample C Male 8.8
Sample D Male 9.2
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 15.3
Min nTPM: 4.9
Sample A Female 9.5
Sample B Female 15.3
Sample C Male 6.5
Sample D Male 4.9
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 14.2
Min nTPM: 8.0
Sample B Female 14.2
Sample C Male 9.6
Sample D Male 8.0
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 6.5
Sample C Male 7.6
Sample D Male 7.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 30.3
Min nTPM: 24.6
Sample A Male 28.6
Sample B Male 27.0
Sample C Female 24.6
Sample D Female 30.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71789849 Antisense, RP_050921_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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