MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA Brain:25.5 nTPM
GTEx:21.2 nTPM
FANTOM5:87.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.7
2219 Male, age 76, both hemispheres 28.2
1830 Male, age 51, unknown 26.0
2666 Male, age 74, left hemisphere 24.9
1870 Female, age 42, unknown 24.3
1833 Male, age 53, unknown 24.2
2828 Female, age 72, unknown 23.6
2586 Male, age 75, left hemisphere 22.6
1827 Male, age 72, unknown 21.9
2411 Female, age 72, unknown 20.8
2019 Male, age 18, unknown 20.2
Dorsal raphe nucleus
nTPM: 19.1
2016 Female, age 72, unknown 22.7
1828 Male, age 53, unknown 20.7
2750 Male, age 76, both hemispheres 20.5
2047 Male, age 72, unknown 16.9
2298 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 21.6
2849 Male, age 72, unknown 26.8
1890 Male, age 53, unknown 21.4
1848 Female, age 42, unknown 20.8
2097 Female, age 72, unknown 17.6
Median raphe nucleus
nTPM: 24.8
2220 Male, age 76, midline 24.8
Periaquaductal grey, anterior
nTPM: 19.8
2502 Female, age 75, unknown 21.7
1795 Male, age 51, unknown 19.2
1947 Male, age 18, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 22.5
2850 Male, age 76, both hemispheres 26.7
1831 Male, age 72, unknown 23.1
2464 Female, age 72, unknown 21.2
1840 Male, age 53, unknown 19.1
Periaquaductal grey, lateral
nTPM: 20.9
2053 Male, age 18, unknown 22.8
2140 Male, age 76, both hemispheres 22.7
2272 Male, age 74, both hemispheres 17.2
Pretectal area
nTPM: 20.6
2407 Male, age 75, both hemispheres 25.6
2316 Male, age 76, right hemisphere 24.9
2825 Male, age 18, unknown 22.2
1815 Male, age 53, unknown 22.0
1817 Female, age 42, unknown 21.9
2224 Female, age 72, unknown 20.2
2007 Male, age 72, unknown 19.6
1816 Male, age 51, unknown 18.5
2667 Female, age 75, unknown 17.6
1944 Female, age 72, unknown 17.4
2273 Male, age 74, both hemispheres 16.9
Red nucleus
nTPM: 25.5
2503 Female, age 72, unknown 30.0
2725 Female, age 75, unknown 27.8
1865 Male, age 51, unknown 27.3
2227 Male, age 72, unknown 27.0
2769 Male, age 72, unknown 26.1
1904 Male, age 53, unknown 26.0
2588 Male, age 74, left hemisphere 24.4
1954 Female, age 42, unknown 24.3
2785 Male, age 18, unknown 23.9
2584 Male, age 75, left hemisphere 23.6
2823 Male, age 76, right hemisphere 23.4
1821 Female, age 72, unknown 21.9
Substantia nigra
nTPM: 19.9
2699 Male, age 18, unknown 26.8
2665 Male, age 74, both hemispheres 22.8
2583 Male, age 75, right hemisphere 21.3
1889 Female, age 72, unknown 19.9
2590 Female, age 75, unknown 19.8
1916 Female, age 42, unknown 18.7
1851 Male, age 51, unknown 18.6
1941 Male, age 53, unknown 18.2
2409 Female, age 72, unknown 17.6
2241 Male, age 72, unknown 15.2
Superior colliculus
nTPM: 22.0
1913 Female, age 42, unknown 26.9
1995 Male, age 72, unknown 25.1
1839 Male, age 51, unknown 23.0
2587 Male, age 74, left hemisphere 22.3
2664 Male, age 75, both hemispheres 22.2
1895 Male, age 76, right hemisphere 22.1
2668 Female, age 75, unknown 20.9
2087 Female, age 72, unknown 20.3
1796 Male, age 53, unknown 19.3
2261 Male, age 18, unknown 17.7
Ventral tegmental area
nTPM: 20.6
2223 Female, age 72, unknown 24.4
2021 Male, age 53, unknown 23.6
2218 Male, age 76, both hemispheres 21.7
1942 Male, age 51, unknown 19.6
1915 Female, age 42, unknown 18.2
2410 Female, age 72, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.2
Samples: 139

Max nTPM: 37.6
Min nTPM: 10.9
Std nTPM: 5.1
Median nTPM: 20.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 37.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 36.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 32.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 32.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 31.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 30.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.4
FF:10158-103A5 76 years, female 87.4

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