MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:829.5 nTPM
HPA Brain:178.4 nTPM
GTEx:829.5 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:101.6 nTPM
Mouse:294.4 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 178.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.0
1870 Female, age 42, unknown 187.8
2586 Male, age 75, left hemisphere 171.9
2666 Male, age 74, left hemisphere 155.5
2219 Male, age 76, both hemispheres 153.0
1833 Male, age 53, unknown 151.4
2828 Female, age 72, unknown 146.8
2019 Male, age 18, unknown 145.8
1830 Male, age 51, unknown 141.1
2411 Female, age 72, unknown 127.2
1827 Male, age 72, unknown 119.8
Dorsal raphe nucleus
nTPM: 162.4
2298 Female, age 72, unknown 194.6
2016 Female, age 72, unknown 180.3
2750 Male, age 76, both hemispheres 163.4
1828 Male, age 53, unknown 153.1
2047 Male, age 72, unknown 120.6
Inferior colliculus
nTPM: 154.4
1890 Male, age 53, unknown 174.8
2849 Male, age 72, unknown 154.6
2097 Female, age 72, unknown 147.0
1848 Female, age 42, unknown 141.3
Median raphe nucleus
nTPM: 161.9
2220 Male, age 76, midline 161.9
Periaquaductal grey, anterior
nTPM: 160.3
2502 Female, age 75, unknown 190.4
1947 Male, age 18, unknown 147.6
1795 Male, age 51, unknown 142.7
Periaquaductal grey, dorsal
nTPM: 154.2
2850 Male, age 76, both hemispheres 175.4
1831 Male, age 72, unknown 160.5
1840 Male, age 53, unknown 159.3
2464 Female, age 72, unknown 121.7
Periaquaductal grey, lateral
nTPM: 148.8
2053 Male, age 18, unknown 164.9
2140 Male, age 76, both hemispheres 153.9
2272 Male, age 74, both hemispheres 127.7
Pretectal area
nTPM: 147.4
2224 Female, age 72, unknown 184.1
2316 Male, age 76, right hemisphere 169.2
1815 Male, age 53, unknown 152.3
2825 Male, age 18, unknown 151.9
1817 Female, age 42, unknown 150.9
1816 Male, age 51, unknown 141.0
2007 Male, age 72, unknown 137.3
2667 Female, age 75, unknown 136.2
1944 Female, age 72, unknown 134.5
2273 Male, age 74, both hemispheres 132.7
2407 Male, age 75, both hemispheres 130.6
Red nucleus
nTPM: 172.4
2503 Female, age 72, unknown 228.2
1865 Male, age 51, unknown 212.4
1904 Male, age 53, unknown 184.4
1821 Female, age 72, unknown 184.3
2725 Female, age 75, unknown 179.2
2769 Male, age 72, unknown 172.0
2227 Male, age 72, unknown 167.1
1954 Female, age 42, unknown 157.4
2785 Male, age 18, unknown 156.5
2584 Male, age 75, left hemisphere 146.8
2588 Male, age 74, left hemisphere 141.9
2823 Male, age 76, right hemisphere 138.3
Substantia nigra
nTPM: 178.4
2241 Male, age 72, unknown 249.2
2699 Male, age 18, unknown 220.3
1851 Male, age 51, unknown 196.7
2409 Female, age 72, unknown 193.5
2665 Male, age 74, both hemispheres 186.9
1916 Female, age 42, unknown 170.4
2590 Female, age 75, unknown 155.9
1889 Female, age 72, unknown 154.4
1941 Male, age 53, unknown 130.9
2583 Male, age 75, right hemisphere 125.6
Superior colliculus
nTPM: 157.0
1913 Female, age 42, unknown 185.8
1995 Male, age 72, unknown 184.2
2587 Male, age 74, left hemisphere 174.6
1796 Male, age 53, unknown 166.1
2664 Male, age 75, both hemispheres 151.4
1895 Male, age 76, right hemisphere 150.5
2668 Female, age 75, unknown 149.1
1839 Male, age 51, unknown 148.1
2087 Female, age 72, unknown 132.2
2261 Male, age 18, unknown 128.0
Ventral tegmental area
nTPM: 168.4
2223 Female, age 72, unknown 198.0
1915 Female, age 42, unknown 192.1
2021 Male, age 53, unknown 162.2
2218 Male, age 76, both hemispheres 159.8
1942 Male, age 51, unknown 153.1
2410 Female, age 72, unknown 145.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 829.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 829.5
Samples: 139

Max nTPM: 2234.7
Min nTPM: 268.6
Std nTPM: 337.6
Median nTPM: 750.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2234.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2123.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2044.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1840.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1621.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1511.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1503.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1401.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1397.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1381.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1365.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.6
Samples: 4

Max nTPM: 130.4
Min nTPM: 78.5
Sample A Female 130.4
Sample B Female 106.3
Sample C Male 91.3
Sample D Male 78.5
Midbrain
nTPM: 93.6
Samples: 4

Max nTPM: 118.9
Min nTPM: 63.2
Sample A Female 118.9
Sample B Female 106.0
Sample C Male 86.1
Sample D Male 63.2
Periaqueductal gray
nTPM: 84.5
Samples: 3

Max nTPM: 93.5
Min nTPM: 75.8
Sample B Female 84.1
Sample C Male 93.5
Sample D Male 75.8
Superior colliculi
nTPM: 91.3
Samples: 4

Max nTPM: 103.6
Min nTPM: 71.5
Sample A Female 103.6
Sample B Female 71.5
Sample C Male 102.6
Sample D Male 87.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 294.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 294.4
Samples: 4

Max nTPM: 318.9
Min nTPM: 273.1
Sample A Male 318.9
Sample B Male 291.1
Sample C Female 273.1
Sample D Female 294.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
68862012 Antisense, RP_050301_01_C11, Mouse strain C57BL/6J (56 days, male) 4.7
74357560 Antisense, RP_051214_01_B11, Mouse strain C57BL/6J (56 days, male) 4.1

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