HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:61.9 nTPM
GTEx:18.6 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:5.4 nTPM
Allen mouse:0.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 61.9
Sample id Sample description nTPM
Hippocampus
nTPM: 46.4
2529 Female, age 94, left hemisphere 63.7
1855 Male, age 76, left hemisphere 51.3
2148 Female, age 91, left hemisphere 46.9
2621 Female, age 67, right hemisphere 42.4
1911 Female, age 85, right hemisphere 39.0
1898 Male, age 80, left hemisphere 35.3
Dentate gyrus
nTPM: 35.5
2246 Female, age 85, both hemispheres 52.7
1927 Female, age 91, both hemispheres 41.7
2531 Female, age 67, both hemispheres 40.3
2528 Male, age 74, both hemispheres 28.6
2010 Male, age 76, both hemispheres 27.5
2530 Female, age 94, left hemisphere 22.5
Entorhinal gyrus
nTPM: 54.4
1938 Female, age 85, left hemisphere 62.4
2686 Male, age 75, right hemisphere 62.3
1787 Male, age 76, left hemisphere 58.6
2764 Male, age 80, right hemisphere 49.8
2613 Female, age 94, left hemisphere 48.8
2117 Female, age 91, right hemisphere 44.9
Hippocampus, CA1
nTPM: 45.6
2527 Male, age 74, both hemispheres 62.6
2082 Female, age 91, right hemisphere 57.8
1873 Female, age 85, both hemispheres 38.2
2749 Male, age 80, left hemisphere 35.1
2045 Male, age 76, both hemispheres 34.5
Hippocampus, CA2
nTPM: 40.4
2113 Female, age 91, right hemisphere 62.3
2437 Female, age 94, left hemisphere 45.9
1940 Female, age 85, left hemisphere 38.1
2249 Male, age 74, both hemispheres 37.5
1892 Male, age 76, both hemispheres 31.2
1963 Male, age 80, left hemisphere 27.5
Hippocampus, CA3
nTPM: 37.7
2861 Female, age 67, both hemispheres 54.7
1891 Female, age 85, both hemispheres 37.8
2436 Male, age 74, both hemispheres 37.1
1867 Male, age 76, both hemispheres 33.4
2137 Male, age 80, left hemisphere 32.7
2620 Female, age 94, left hemisphere 30.4
Parahippocampal cortex
nTPM: 61.9
2622 Female, age 67, right hemisphere 81.3
2692 Male, age 74, both hemispheres 78.3
1933 Female, age 85, both hemispheres 69.2
2250 Female, age 67, right hemisphere 61.8
2693 Female, age 94, both hemispheres 59.0
2532 Female, age 72, left hemisphere 58.4
1850 Male, age 80, both hemispheres 56.9
2245 Female, age 91, both hemispheres 56.3
1990 Female, age 91, right hemisphere 53.7
2018 Male, age 76, both hemispheres 43.9
Perirhinal gyrus
nTPM: 61.5
1794 Male, age 80, right hemisphere 68.5
1847 Female, age 91, left hemisphere 66.6
1841 Female, age 85, right hemisphere 60.7
2521 Female, age 94, right hemisphere 58.0
2848 Male, age 76, right hemisphere 53.9
Subiculum
nTPM: 46.3
2619 Male, age 74, both hemispheres 76.0
2438 Female, age 94, left hemisphere 57.6
1977 Female, age 85, both hemispheres 44.6
2729 Female, age 91, right hemisphere 43.0
1901 Male, age 80, both hemispheres 28.8
2042 Male, age 76, both hemispheres 27.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.6
Samples: 197

Max nTPM: 58.5
Min nTPM: 0.6
Std nTPM: 11.7
Median nTPM: 16.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 58.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 56.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 55.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 53.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 51.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 48.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 47.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 47.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 46.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 45.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 44.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 43.5
FF:10153-102I9 76 years, female 48.7
FF:10169-103B7 60 years, female 38.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Subiculum
nTPM: 14.6
Samples: 4

Max nTPM: 15.4
Min nTPM: 14.2
Sample A Female 15.4
Sample B Female 14.3
Sample C Male 14.5
Sample D Male 14.2
Dorsal hippocampus
nTPM: 8.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 8.3
Sample C Male 9.3
Sample D Male 7.8
Entorhinal cortex
nTPM: 16.7
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.9
Sample A Female 17.4
Sample B Female 18.3
Sample C Male 16.0
Sample D Male 14.9
Ventral hippocampus
nTPM: 10.7
Samples: 4

Max nTPM: 13.8
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 11.6
Sample C Male 13.8
Sample D Male 8.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.4
Samples: 4

Max nTPM: 5.8
Min nTPM: 5.0
Sample A Male 5.5
Sample B Male 5.4
Sample C Female 5.0
Sample D Female 5.8
Hippocampal formation
nTPM: 3.8
Samples: 4

Max nTPM: 5.0
Min nTPM: 2.4
Sample A Male 4.7
Sample B Male 3.2
Sample C Female 2.4
Sample D Female 5.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
71021063 Antisense, RP_050526_02_F03, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org