MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.1 nTPM
HPA Brain:86.4 nTPM
GTEx:32.1 nTPM
FANTOM5:7.9 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:4.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2586 Male, age 75, left hemisphere 105.5
2828 Female, age 72, unknown 72.2
1833 Male, age 53, unknown 71.6
2666 Male, age 74, left hemisphere 71.5
1827 Male, age 72, unknown 62.3
1830 Male, age 51, unknown 60.8
2219 Male, age 76, both hemispheres 58.5
2411 Female, age 72, unknown 55.4
1870 Female, age 42, unknown 52.6
2019 Male, age 18, unknown 39.3
Dorsal raphe nucleus
nTPM: 64.0
2047 Male, age 72, unknown 75.2
1828 Male, age 53, unknown 69.7
2750 Male, age 76, both hemispheres 59.4
2016 Female, age 72, unknown 58.4
2298 Female, age 72, unknown 57.3
Inferior colliculus
nTPM: 86.4
1848 Female, age 42, unknown 98.4
1890 Male, age 53, unknown 93.4
2849 Male, age 72, unknown 90.5
2097 Female, age 72, unknown 63.3
Median raphe nucleus
nTPM: 42.4
2220 Male, age 76, midline 42.4
Periaquaductal grey, anterior
nTPM: 74.9
1947 Male, age 18, unknown 87.1
2502 Female, age 75, unknown 71.0
1795 Male, age 51, unknown 66.4
Periaquaductal grey, dorsal
nTPM: 82.4
1840 Male, age 53, unknown 96.2
1831 Male, age 72, unknown 87.4
2464 Female, age 72, unknown 81.6
2850 Male, age 76, both hemispheres 64.2
Periaquaductal grey, lateral
nTPM: 64.7
2140 Male, age 76, both hemispheres 92.8
2053 Male, age 18, unknown 61.5
2272 Male, age 74, both hemispheres 39.8
Pretectal area
nTPM: 64.0
1817 Female, age 42, unknown 85.1
2825 Male, age 18, unknown 79.4
1816 Male, age 51, unknown 76.5
2667 Female, age 75, unknown 74.4
2316 Male, age 76, right hemisphere 73.6
2224 Female, age 72, unknown 63.8
1944 Female, age 72, unknown 63.5
1815 Male, age 53, unknown 62.3
2007 Male, age 72, unknown 56.2
2407 Male, age 75, both hemispheres 39.2
2273 Male, age 74, both hemispheres 29.7
Red nucleus
nTPM: 75.4
2588 Male, age 74, left hemisphere 100.6
1954 Female, age 42, unknown 90.7
1821 Female, age 72, unknown 90.4
1904 Male, age 53, unknown 84.2
2823 Male, age 76, right hemisphere 83.2
2769 Male, age 72, unknown 83.1
2503 Female, age 72, unknown 78.4
2227 Male, age 72, unknown 77.5
1865 Male, age 51, unknown 71.5
2725 Female, age 75, unknown 58.0
2584 Male, age 75, left hemisphere 43.6
2785 Male, age 18, unknown 43.2
Substantia nigra
nTPM: 84.7
2699 Male, age 18, unknown 114.0
1916 Female, age 42, unknown 106.0
2665 Male, age 74, both hemispheres 102.3
2241 Male, age 72, unknown 94.0
1889 Female, age 72, unknown 80.4
1851 Male, age 51, unknown 79.8
2590 Female, age 75, unknown 78.8
2409 Female, age 72, unknown 75.6
2583 Male, age 75, right hemisphere 71.6
1941 Male, age 53, unknown 44.2
Superior colliculus
nTPM: 63.5
2087 Female, age 72, unknown 81.1
1895 Male, age 76, right hemisphere 78.7
2664 Male, age 75, both hemispheres 78.0
2261 Male, age 18, unknown 77.6
2668 Female, age 75, unknown 69.2
1839 Male, age 51, unknown 66.1
1796 Male, age 53, unknown 65.7
2587 Male, age 74, left hemisphere 49.1
1995 Male, age 72, unknown 36.0
1913 Female, age 42, unknown 33.7
Ventral tegmental area
nTPM: 60.0
1915 Female, age 42, unknown 71.6
2410 Female, age 72, unknown 67.7
2218 Male, age 76, both hemispheres 64.9
2021 Male, age 53, unknown 54.3
1942 Male, age 51, unknown 53.8
2223 Female, age 72, unknown 48.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 126.8
Min nTPM: 1.7
Std nTPM: 22.6
Median nTPM: 28.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 126.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 123.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 91.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 88.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 87.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 85.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 79.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 71.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 69.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 65.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 62.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.9
FF:10158-103A5 76 years, female 7.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 14.1
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 14.1
Sample C Male 9.5
Sample D Male 12.5
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 14.1
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 11.6
Sample C Male 11.8
Sample D Male 14.1
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 11.8
Min nTPM: 7.5
Sample B Female 11.8
Sample C Male 8.4
Sample D Male 7.5
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 9.7
Sample A Female 17.0
Sample B Female 24.8
Sample C Male 9.7
Sample D Male 11.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.7
Sample A Male 5.6
Sample B Male 3.7
Sample C Female 4.2
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71021063 Antisense, RP_050526_02_F03, Mouse strain C57BL/6J (56 days, male) 0.0

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