MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.2 nTPM
HPA Brain:86.4 nTPM
GTEx:18.2 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:63.3 nTPM
Mouse:28.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.8
1827 Male, age 72, unknown 88.1
2586 Male, age 75, left hemisphere 83.4
2219 Male, age 76, both hemispheres 81.1
1870 Female, age 42, unknown 78.0
2411 Female, age 72, unknown 76.0
2666 Male, age 74, left hemisphere 75.9
1830 Male, age 51, unknown 74.0
2828 Female, age 72, unknown 74.0
1833 Male, age 53, unknown 73.8
2019 Male, age 18, unknown 63.6
Dorsal raphe nucleus
nTPM: 76.6
2298 Female, age 72, unknown 83.2
2047 Male, age 72, unknown 81.6
2016 Female, age 72, unknown 76.9
2750 Male, age 76, both hemispheres 71.5
1828 Male, age 53, unknown 69.6
Inferior colliculus
nTPM: 81.6
2849 Male, age 72, unknown 86.5
2097 Female, age 72, unknown 82.8
1848 Female, age 42, unknown 82.3
1890 Male, age 53, unknown 74.7
Median raphe nucleus
nTPM: 80.3
2220 Male, age 76, midline 80.3
Periaquaductal grey, anterior
nTPM: 86.4
1947 Male, age 18, unknown 91.9
1795 Male, age 51, unknown 86.4
2502 Female, age 75, unknown 81.0
Periaquaductal grey, dorsal
nTPM: 82.5
1840 Male, age 53, unknown 93.8
2850 Male, age 76, both hemispheres 81.8
1831 Male, age 72, unknown 77.6
2464 Female, age 72, unknown 76.9
Periaquaductal grey, lateral
nTPM: 84.0
2140 Male, age 76, both hemispheres 88.4
2053 Male, age 18, unknown 87.3
2272 Male, age 74, both hemispheres 76.2
Pretectal area
nTPM: 79.5
2224 Female, age 72, unknown 90.8
2825 Male, age 18, unknown 86.7
1816 Male, age 51, unknown 83.0
2667 Female, age 75, unknown 81.5
1817 Female, age 42, unknown 77.6
2316 Male, age 76, right hemisphere 77.2
2007 Male, age 72, unknown 76.6
2407 Male, age 75, both hemispheres 76.1
2273 Male, age 74, both hemispheres 75.3
1815 Male, age 53, unknown 74.9
1944 Female, age 72, unknown 74.7
Red nucleus
nTPM: 70.3
2588 Male, age 74, left hemisphere 80.7
2503 Female, age 72, unknown 77.1
2725 Female, age 75, unknown 74.6
2584 Male, age 75, left hemisphere 72.1
1821 Female, age 72, unknown 71.0
2227 Male, age 72, unknown 68.1
2823 Male, age 76, right hemisphere 68.1
1904 Male, age 53, unknown 67.9
2769 Male, age 72, unknown 66.9
1865 Male, age 51, unknown 66.6
1954 Female, age 42, unknown 66.0
2785 Male, age 18, unknown 64.0
Substantia nigra
nTPM: 75.5
2665 Male, age 74, both hemispheres 83.9
2590 Female, age 75, unknown 81.2
1941 Male, age 53, unknown 77.3
1916 Female, age 42, unknown 76.3
2583 Male, age 75, right hemisphere 75.4
2241 Male, age 72, unknown 75.0
1889 Female, age 72, unknown 73.9
1851 Male, age 51, unknown 73.3
2699 Male, age 18, unknown 72.4
2409 Female, age 72, unknown 65.9
Superior colliculus
nTPM: 77.6
1796 Male, age 53, unknown 88.2
2261 Male, age 18, unknown 87.4
1839 Male, age 51, unknown 81.5
2664 Male, age 75, both hemispheres 79.3
2587 Male, age 74, left hemisphere 77.2
2087 Female, age 72, unknown 77.1
1895 Male, age 76, right hemisphere 72.8
1913 Female, age 42, unknown 72.4
1995 Male, age 72, unknown 70.5
2668 Female, age 75, unknown 70.1
Ventral tegmental area
nTPM: 76.6
2021 Male, age 53, unknown 77.9
1942 Male, age 51, unknown 77.5
2410 Female, age 72, unknown 76.9
1915 Female, age 42, unknown 76.6
2218 Male, age 76, both hemispheres 76.1
2223 Female, age 72, unknown 74.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.2
Samples: 139

Max nTPM: 28.9
Min nTPM: 12.6
Std nTPM: 2.5
Median nTPM: 18.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 26.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 25.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 24.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 24.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 23.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 21.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 21.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.4
FF:10158-103A5 76 years, female 51.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.2
Samples: 4

Max nTPM: 62.8
Min nTPM: 55.3
Sample A Female 57.8
Sample B Female 55.3
Sample C Male 62.8
Sample D Male 56.9
Midbrain
nTPM: 63.3
Samples: 4

Max nTPM: 70.6
Min nTPM: 55.8
Sample A Female 64.8
Sample B Female 55.8
Sample C Male 70.6
Sample D Male 62.1
Periaqueductal gray
nTPM: 58.1
Samples: 3

Max nTPM: 62.9
Min nTPM: 54.4
Sample B Female 56.9
Sample C Male 62.9
Sample D Male 54.4
Superior colliculi
nTPM: 58.3
Samples: 4

Max nTPM: 61.2
Min nTPM: 53.5
Sample A Female 59.0
Sample B Female 53.5
Sample C Male 59.3
Sample D Male 61.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 31.6
Min nTPM: 25.6
Sample A Male 25.6
Sample B Male 27.4
Sample C Female 31.6
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73424038 Antisense, RP_051019_03_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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