MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:159.8 nTPM
HPA Brain:529.0 nTPM
GTEx:159.8 nTPM
FANTOM5:607.0 Scaled Tags Per Million
Pig:68.4 nTPM
Mouse:99.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 529.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 298.0
2828 Female, age 72, unknown 397.8
2586 Male, age 75, left hemisphere 368.2
2666 Male, age 74, left hemisphere 324.9
1870 Female, age 42, unknown 312.3
1833 Male, age 53, unknown 292.1
1827 Male, age 72, unknown 285.9
2019 Male, age 18, unknown 285.5
1830 Male, age 51, unknown 272.2
2411 Female, age 72, unknown 250.9
2219 Male, age 76, both hemispheres 190.3
Dorsal raphe nucleus
nTPM: 423.1
2016 Female, age 72, unknown 531.3
2047 Male, age 72, unknown 449.3
1828 Male, age 53, unknown 434.1
2298 Female, age 72, unknown 418.2
2750 Male, age 76, both hemispheres 282.4
Inferior colliculus
nTPM: 373.9
1848 Female, age 42, unknown 406.4
2849 Male, age 72, unknown 376.4
1890 Male, age 53, unknown 370.9
2097 Female, age 72, unknown 342.1
Median raphe nucleus
nTPM: 384.4
2220 Male, age 76, midline 384.4
Periaquaductal grey, anterior
nTPM: 340.1
2502 Female, age 75, unknown 379.5
1795 Male, age 51, unknown 364.4
1947 Male, age 18, unknown 276.3
Periaquaductal grey, dorsal
nTPM: 511.9
2850 Male, age 76, both hemispheres 770.8
1840 Male, age 53, unknown 499.7
1831 Male, age 72, unknown 432.1
2464 Female, age 72, unknown 345.0
Periaquaductal grey, lateral
nTPM: 529.0
2140 Male, age 76, both hemispheres 685.8
2053 Male, age 18, unknown 494.0
2272 Male, age 74, both hemispheres 407.3
Pretectal area
nTPM: 352.8
2273 Male, age 74, both hemispheres 469.6
2316 Male, age 76, right hemisphere 426.3
2407 Male, age 75, both hemispheres 402.1
2224 Female, age 72, unknown 391.4
2667 Female, age 75, unknown 362.8
2825 Male, age 18, unknown 352.1
1944 Female, age 72, unknown 344.5
1817 Female, age 42, unknown 315.4
1815 Male, age 53, unknown 287.0
1816 Male, age 51, unknown 278.9
2007 Male, age 72, unknown 250.9
Red nucleus
nTPM: 288.4
2227 Male, age 72, unknown 323.1
1954 Female, age 42, unknown 320.6
2769 Male, age 72, unknown 320.0
2503 Female, age 72, unknown 312.8
1865 Male, age 51, unknown 301.5
2785 Male, age 18, unknown 297.8
1821 Female, age 72, unknown 291.4
1904 Male, age 53, unknown 286.0
2823 Male, age 76, right hemisphere 276.7
2725 Female, age 75, unknown 260.9
2588 Male, age 74, left hemisphere 241.3
2584 Male, age 75, left hemisphere 228.7
Substantia nigra
nTPM: 366.8
2699 Male, age 18, unknown 560.6
1916 Female, age 42, unknown 402.7
1851 Male, age 51, unknown 373.2
2665 Male, age 74, both hemispheres 366.6
2590 Female, age 75, unknown 350.2
2241 Male, age 72, unknown 345.4
1941 Male, age 53, unknown 341.0
1889 Female, age 72, unknown 319.4
2409 Female, age 72, unknown 305.4
2583 Male, age 75, right hemisphere 303.6
Superior colliculus
nTPM: 335.7
2664 Male, age 75, both hemispheres 433.5
1995 Male, age 72, unknown 403.1
2587 Male, age 74, left hemisphere 375.4
1913 Female, age 42, unknown 342.2
1839 Male, age 51, unknown 333.3
1796 Male, age 53, unknown 332.0
2087 Female, age 72, unknown 329.6
2668 Female, age 75, unknown 318.0
2261 Male, age 18, unknown 264.0
1895 Male, age 76, right hemisphere 225.7
Ventral tegmental area
nTPM: 365.6
2021 Male, age 53, unknown 437.0
1942 Male, age 51, unknown 409.1
1915 Female, age 42, unknown 367.6
2218 Male, age 76, both hemispheres 350.6
2223 Female, age 72, unknown 333.6
2410 Female, age 72, unknown 295.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.8
Samples: 139

Max nTPM: 537.8
Min nTPM: 57.0
Std nTPM: 97.3
Median nTPM: 128.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 537.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 531.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 485.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 474.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 426.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 361.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 359.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 351.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 349.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 338.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 335.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 607.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 607.0
FF:10158-103A5 76 years, female 607.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.1
Samples: 4

Max nTPM: 63.8
Min nTPM: 51.1
Sample A Female 54.1
Sample B Female 51.1
Sample C Male 55.2
Sample D Male 63.8
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 90.8
Min nTPM: 42.1
Sample A Female 42.1
Sample B Female 74.6
Sample C Male 90.8
Sample D Male 66.1
Periaqueductal gray
nTPM: 66.3
Samples: 3

Max nTPM: 78.1
Min nTPM: 58.4
Sample B Female 78.1
Sample C Male 58.4
Sample D Male 62.5
Superior colliculi
nTPM: 66.9
Samples: 4

Max nTPM: 90.1
Min nTPM: 46.6
Sample A Female 60.0
Sample B Female 46.6
Sample C Male 90.1
Sample D Male 70.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.2
Samples: 4

Max nTPM: 105.5
Min nTPM: 90.9
Sample A Male 99.0
Sample B Male 90.9
Sample C Female 105.5
Sample D Female 101.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
77413704 Antisense, RP_070205_01_E07, Mouse strain C57BL/6J (56 days, male) 3.1
70919167 Antisense, RP_050712_04_C11, Mouse strain C57BL/6J (56 days, male) 0.0

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