MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.1 nTPM
HPA Brain:296.7 nTPM
GTEx:128.1 nTPM
FANTOM5:128.1 Scaled Tags Per Million
Pig:251.4 nTPM
Mouse:168.8 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 296.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 231.4
2586 Male, age 75, left hemisphere 403.5
2828 Female, age 72, unknown 319.8
2666 Male, age 74, left hemisphere 279.8
1827 Male, age 72, unknown 267.0
1870 Female, age 42, unknown 237.4
1833 Male, age 53, unknown 192.4
2411 Female, age 72, unknown 181.2
1830 Male, age 51, unknown 172.9
2219 Male, age 76, both hemispheres 157.2
2019 Male, age 18, unknown 102.8
Dorsal raphe nucleus
nTPM: 275.8
2047 Male, age 72, unknown 348.2
2016 Female, age 72, unknown 294.9
2298 Female, age 72, unknown 284.5
1828 Male, age 53, unknown 245.0
2750 Male, age 76, both hemispheres 206.5
Inferior colliculus
nTPM: 203.6
2849 Male, age 72, unknown 255.7
1848 Female, age 42, unknown 222.8
1890 Male, age 53, unknown 173.3
2097 Female, age 72, unknown 162.7
Median raphe nucleus
nTPM: 227.0
2220 Male, age 76, midline 227.0
Periaquaductal grey, anterior
nTPM: 296.7
1795 Male, age 51, unknown 308.5
1947 Male, age 18, unknown 295.3
2502 Female, age 75, unknown 286.4
Periaquaductal grey, dorsal
nTPM: 281.4
1840 Male, age 53, unknown 346.0
2850 Male, age 76, both hemispheres 297.7
2464 Female, age 72, unknown 247.9
1831 Male, age 72, unknown 234.0
Periaquaductal grey, lateral
nTPM: 291.4
2053 Male, age 18, unknown 363.7
2140 Male, age 76, both hemispheres 308.6
2272 Male, age 74, both hemispheres 202.0
Pretectal area
nTPM: 219.9
2825 Male, age 18, unknown 322.2
2224 Female, age 72, unknown 290.4
1816 Male, age 51, unknown 222.1
2273 Male, age 74, both hemispheres 219.1
2667 Female, age 75, unknown 216.9
2407 Male, age 75, both hemispheres 214.5
1815 Male, age 53, unknown 197.0
2316 Male, age 76, right hemisphere 196.4
1944 Female, age 72, unknown 194.8
1817 Female, age 42, unknown 185.1
2007 Male, age 72, unknown 160.0
Red nucleus
nTPM: 157.5
2725 Female, age 75, unknown 183.8
2503 Female, age 72, unknown 176.9
2584 Male, age 75, left hemisphere 173.9
2588 Male, age 74, left hemisphere 172.9
2227 Male, age 72, unknown 167.1
2769 Male, age 72, unknown 165.2
1821 Female, age 72, unknown 155.4
1904 Male, age 53, unknown 151.0
1865 Male, age 51, unknown 149.8
1954 Female, age 42, unknown 148.2
2823 Male, age 76, right hemisphere 138.8
2785 Male, age 18, unknown 106.4
Substantia nigra
nTPM: 192.0
2699 Male, age 18, unknown 253.6
2665 Male, age 74, both hemispheres 247.0
1916 Female, age 42, unknown 216.1
2590 Female, age 75, unknown 191.4
2583 Male, age 75, right hemisphere 189.5
1851 Male, age 51, unknown 183.3
1889 Female, age 72, unknown 182.5
1941 Male, age 53, unknown 176.0
2241 Male, age 72, unknown 140.9
2409 Female, age 72, unknown 139.8
Superior colliculus
nTPM: 237.2
2664 Male, age 75, both hemispheres 396.8
2261 Male, age 18, unknown 275.9
1796 Male, age 53, unknown 265.0
1839 Male, age 51, unknown 249.7
1995 Male, age 72, unknown 215.5
2587 Male, age 74, left hemisphere 204.7
2087 Female, age 72, unknown 204.0
2668 Female, age 75, unknown 198.7
1913 Female, age 42, unknown 190.2
1895 Male, age 76, right hemisphere 171.8
Ventral tegmental area
nTPM: 209.6
2021 Male, age 53, unknown 253.4
1942 Male, age 51, unknown 239.8
1915 Female, age 42, unknown 214.6
2218 Male, age 76, both hemispheres 186.6
2223 Female, age 72, unknown 183.6
2410 Female, age 72, unknown 179.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 128.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.1
Samples: 139

Max nTPM: 346.0
Min nTPM: 28.2
Std nTPM: 57.0
Median nTPM: 117.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 346.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 331.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 294.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 277.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 271.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 247.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 235.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 233.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 233.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 225.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 224.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.1
FF:10158-103A5 76 years, female 128.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 251.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 246.4
Samples: 4

Max nTPM: 259.3
Min nTPM: 233.4
Sample A Female 251.2
Sample B Female 233.4
Sample C Male 259.3
Sample D Male 241.5
Midbrain
nTPM: 230.9
Samples: 4

Max nTPM: 262.4
Min nTPM: 201.9
Sample A Female 262.4
Sample B Female 253.2
Sample C Male 201.9
Sample D Male 205.9
Periaqueductal gray
nTPM: 251.4
Samples: 3

Max nTPM: 269.9
Min nTPM: 222.3
Sample B Female 269.9
Sample C Male 262.1
Sample D Male 222.3
Superior colliculi
nTPM: 184.5
Samples: 4

Max nTPM: 215.9
Min nTPM: 135.8
Sample A Female 208.2
Sample B Female 135.8
Sample C Male 178.0
Sample D Male 215.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 168.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 168.8
Samples: 4

Max nTPM: 178.3
Min nTPM: 159.6
Sample A Male 178.3
Sample B Male 159.6
Sample C Female 174.5
Sample D Female 162.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69015290 Antisense, RP_050310_02_F08, Mouse strain C57BL/6J (56 days, male) 4.2

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