MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.1 nTPM
HPA Brain:51.9 nTPM
GTEx:29.1 nTPM
FANTOM5:7.9 Scaled Tags Per Million
Pig:132.0 nTPM
Mouse:95.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.1
2219 Male, age 76, both hemispheres 65.7
1827 Male, age 72, unknown 47.5
2586 Male, age 75, left hemisphere 38.4
2828 Female, age 72, unknown 34.1
2666 Male, age 74, left hemisphere 32.8
1870 Female, age 42, unknown 28.5
2411 Female, age 72, unknown 28.2
1833 Male, age 53, unknown 26.6
1830 Male, age 51, unknown 25.1
2019 Male, age 18, unknown 14.3
Dorsal raphe nucleus
nTPM: 27.3
2298 Female, age 72, unknown 33.2
2016 Female, age 72, unknown 30.5
1828 Male, age 53, unknown 25.9
2047 Male, age 72, unknown 23.9
2750 Male, age 76, both hemispheres 22.9
Inferior colliculus
nTPM: 44.7
1848 Female, age 42, unknown 55.1
2097 Female, age 72, unknown 45.4
2849 Male, age 72, unknown 44.7
1890 Male, age 53, unknown 33.4
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Periaquaductal grey, anterior
nTPM: 51.9
1947 Male, age 18, unknown 74.8
2502 Female, age 75, unknown 44.9
1795 Male, age 51, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 34.1
1840 Male, age 53, unknown 40.3
1831 Male, age 72, unknown 37.8
2464 Female, age 72, unknown 29.9
2850 Male, age 76, both hemispheres 28.3
Periaquaductal grey, lateral
nTPM: 31.6
2053 Male, age 18, unknown 42.0
2140 Male, age 76, both hemispheres 26.9
2272 Male, age 74, both hemispheres 25.8
Pretectal area
nTPM: 35.4
1816 Male, age 51, unknown 53.3
2407 Male, age 75, both hemispheres 39.6
2825 Male, age 18, unknown 39.5
2316 Male, age 76, right hemisphere 38.5
1944 Female, age 72, unknown 38.2
2273 Male, age 74, both hemispheres 33.0
2224 Female, age 72, unknown 31.7
2667 Female, age 75, unknown 30.5
2007 Male, age 72, unknown 29.0
1815 Male, age 53, unknown 28.8
1817 Female, age 42, unknown 27.2
Red nucleus
nTPM: 28.7
1954 Female, age 42, unknown 35.8
1821 Female, age 72, unknown 34.6
2227 Male, age 72, unknown 32.9
2769 Male, age 72, unknown 32.4
2503 Female, age 72, unknown 29.5
2725 Female, age 75, unknown 28.9
1865 Male, age 51, unknown 28.7
2584 Male, age 75, left hemisphere 28.7
1904 Male, age 53, unknown 27.2
2823 Male, age 76, right hemisphere 26.2
2588 Male, age 74, left hemisphere 24.7
2785 Male, age 18, unknown 15.3
Substantia nigra
nTPM: 33.0
1941 Male, age 53, unknown 59.7
2699 Male, age 18, unknown 34.7
1916 Female, age 42, unknown 34.4
1889 Female, age 72, unknown 32.9
2241 Male, age 72, unknown 32.9
2590 Female, age 75, unknown 30.9
1851 Male, age 51, unknown 28.5
2665 Male, age 74, both hemispheres 28.3
2583 Male, age 75, right hemisphere 24.4
2409 Female, age 72, unknown 23.3
Superior colliculus
nTPM: 39.4
2261 Male, age 18, unknown 58.6
2668 Female, age 75, unknown 47.6
1895 Male, age 76, right hemisphere 46.8
2087 Female, age 72, unknown 45.2
1796 Male, age 53, unknown 44.3
2664 Male, age 75, both hemispheres 42.6
1839 Male, age 51, unknown 36.5
2587 Male, age 74, left hemisphere 27.8
1913 Female, age 42, unknown 22.9
1995 Male, age 72, unknown 21.5
Ventral tegmental area
nTPM: 29.4
2218 Male, age 76, both hemispheres 37.5
1942 Male, age 51, unknown 36.7
1915 Female, age 42, unknown 32.9
2410 Female, age 72, unknown 27.7
2021 Male, age 53, unknown 22.2
2223 Female, age 72, unknown 19.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.1
Samples: 139

Max nTPM: 139.5
Min nTPM: 4.7
Std nTPM: 19.2
Median nTPM: 25.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 139.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 129.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 102.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 70.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 64.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 57.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 54.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 53.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 52.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 51.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 51.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.9
FF:10158-103A5 76 years, female 7.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 132.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 108.1
Samples: 4

Max nTPM: 152.3
Min nTPM: 66.2
Sample A Female 152.3
Sample B Female 92.7
Sample C Male 121.1
Sample D Male 66.2
Midbrain
nTPM: 132.0
Samples: 4

Max nTPM: 188.7
Min nTPM: 72.8
Sample A Female 188.7
Sample B Female 72.8
Sample C Male 143.5
Sample D Male 123.1
Periaqueductal gray
nTPM: 71.1
Samples: 3

Max nTPM: 83.9
Min nTPM: 61.8
Sample B Female 61.8
Sample C Male 83.9
Sample D Male 67.6
Superior colliculi
nTPM: 109.1
Samples: 4

Max nTPM: 138.6
Min nTPM: 85.9
Sample A Female 138.6
Sample B Female 85.9
Sample C Male 99.0
Sample D Male 112.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.7
Samples: 4

Max nTPM: 97.0
Min nTPM: 94.3
Sample A Male 95.7
Sample B Male 94.3
Sample C Female 97.0
Sample D Female 95.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
72472773 Antisense, RP_051101_02_D05, Mouse strain C57BL/6J (56 days, male) 1.0
69608408 Antisense, RP_050426_04_A10, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org