MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.0 nTPM
HPA Brain:81.0 nTPM
GTEx:53.0 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:9.4 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.3
1870 Female, age 42, unknown 65.6
2666 Male, age 74, left hemisphere 64.0
2828 Female, age 72, unknown 61.9
2586 Male, age 75, left hemisphere 61.2
1827 Male, age 72, unknown 59.8
2219 Male, age 76, both hemispheres 51.7
1833 Male, age 53, unknown 49.1
1830 Male, age 51, unknown 47.8
2411 Female, age 72, unknown 45.7
2019 Male, age 18, unknown 36.3
Dorsal raphe nucleus
nTPM: 65.8
2016 Female, age 72, unknown 79.4
2298 Female, age 72, unknown 69.8
1828 Male, age 53, unknown 66.9
2047 Male, age 72, unknown 60.7
2750 Male, age 76, both hemispheres 52.4
Inferior colliculus
nTPM: 59.0
2849 Male, age 72, unknown 67.9
1848 Female, age 42, unknown 59.8
2097 Female, age 72, unknown 55.8
1890 Male, age 53, unknown 52.6
Median raphe nucleus
nTPM: 65.0
2220 Male, age 76, midline 65.0
Periaquaductal grey, anterior
nTPM: 67.3
1795 Male, age 51, unknown 78.1
2502 Female, age 75, unknown 67.6
1947 Male, age 18, unknown 56.2
Periaquaductal grey, dorsal
nTPM: 81.0
1840 Male, age 53, unknown 98.4
2850 Male, age 76, both hemispheres 86.8
1831 Male, age 72, unknown 79.3
2464 Female, age 72, unknown 59.3
Periaquaductal grey, lateral
nTPM: 77.0
2140 Male, age 76, both hemispheres 88.0
2053 Male, age 18, unknown 83.2
2272 Male, age 74, both hemispheres 59.9
Pretectal area
nTPM: 66.6
2224 Female, age 72, unknown 87.7
2273 Male, age 74, both hemispheres 83.9
2825 Male, age 18, unknown 79.2
2667 Female, age 75, unknown 75.6
2407 Male, age 75, both hemispheres 69.9
1944 Female, age 72, unknown 63.3
1816 Male, age 51, unknown 60.0
2316 Male, age 76, right hemisphere 59.9
1815 Male, age 53, unknown 55.0
1817 Female, age 42, unknown 51.8
2007 Male, age 72, unknown 46.1
Red nucleus
nTPM: 42.1
2584 Male, age 75, left hemisphere 54.2
2503 Female, age 72, unknown 48.8
2769 Male, age 72, unknown 45.7
2227 Male, age 72, unknown 45.4
2725 Female, age 75, unknown 42.6
2588 Male, age 74, left hemisphere 42.4
1821 Female, age 72, unknown 41.2
1865 Male, age 51, unknown 39.4
2785 Male, age 18, unknown 38.0
1954 Female, age 42, unknown 36.5
1904 Male, age 53, unknown 35.3
2823 Male, age 76, right hemisphere 35.3
Substantia nigra
nTPM: 57.1
2699 Male, age 18, unknown 76.8
1941 Male, age 53, unknown 61.1
2583 Male, age 75, right hemisphere 56.9
2665 Male, age 74, both hemispheres 56.1
1916 Female, age 42, unknown 55.4
1851 Male, age 51, unknown 55.3
2241 Male, age 72, unknown 54.0
2409 Female, age 72, unknown 53.8
2590 Female, age 75, unknown 51.5
1889 Female, age 72, unknown 49.5
Superior colliculus
nTPM: 63.4
2664 Male, age 75, both hemispheres 83.9
2261 Male, age 18, unknown 66.6
1796 Male, age 53, unknown 65.7
1839 Male, age 51, unknown 65.6
1995 Male, age 72, unknown 65.4
1913 Female, age 42, unknown 61.5
2587 Male, age 74, left hemisphere 61.4
2087 Female, age 72, unknown 60.0
2668 Female, age 75, unknown 57.7
1895 Male, age 76, right hemisphere 46.4
Ventral tegmental area
nTPM: 64.7
2021 Male, age 53, unknown 76.3
1942 Male, age 51, unknown 69.2
2223 Female, age 72, unknown 67.4
1915 Female, age 42, unknown 64.8
2218 Male, age 76, both hemispheres 61.7
2410 Female, age 72, unknown 48.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.0
Samples: 139

Max nTPM: 92.7
Min nTPM: 32.6
Std nTPM: 11.4
Median nTPM: 50.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 92.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 92.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 90.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 84.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 76.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 76.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 74.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 74.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 69.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 67.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.4
FF:10158-103A5 76 years, female 51.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.0
Samples: 4

Max nTPM: 47.8
Min nTPM: 33.8
Sample A Female 47.8
Sample B Female 39.4
Sample C Male 47.1
Sample D Male 33.8
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 56.8
Min nTPM: 38.9
Sample A Female 56.8
Sample B Female 38.9
Sample C Male 45.9
Sample D Male 40.1
Periaqueductal gray
nTPM: 39.8
Samples: 3

Max nTPM: 48.0
Min nTPM: 30.6
Sample B Female 40.8
Sample C Male 48.0
Sample D Male 30.6
Superior colliculi
nTPM: 43.9
Samples: 4

Max nTPM: 57.1
Min nTPM: 35.3
Sample A Female 57.1
Sample B Female 35.3
Sample C Male 44.1
Sample D Male 38.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.2
Sample A Male 10.1
Sample B Male 8.2
Sample C Female 9.8
Sample D Female 9.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69080045 Antisense, RP_050324_01_F08, Mouse strain C57BL/6J (56 days, male) 0.9

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