MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA Brain:36.4 nTPM
GTEx:5.0 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:3.9 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
2586 Male, age 75, left hemisphere 53.3
2828 Female, age 72, unknown 34.7
1827 Male, age 72, unknown 28.4
2219 Male, age 76, both hemispheres 27.1
1833 Male, age 53, unknown 25.6
1870 Female, age 42, unknown 24.8
2666 Male, age 74, left hemisphere 23.9
1830 Male, age 51, unknown 21.5
2411 Female, age 72, unknown 20.1
2019 Male, age 18, unknown 15.0
Dorsal raphe nucleus
nTPM: 30.5
2047 Male, age 72, unknown 36.8
2016 Female, age 72, unknown 31.1
1828 Male, age 53, unknown 31.0
2298 Female, age 72, unknown 30.5
2750 Male, age 76, both hemispheres 23.2
Inferior colliculus
nTPM: 30.6
2849 Male, age 72, unknown 34.4
1848 Female, age 42, unknown 33.9
2097 Female, age 72, unknown 28.0
1890 Male, age 53, unknown 25.8
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 36.4
2502 Female, age 75, unknown 41.8
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 31.6
1840 Male, age 53, unknown 41.3
2850 Male, age 76, both hemispheres 33.0
2464 Female, age 72, unknown 27.9
1831 Male, age 72, unknown 24.3
Periaquaductal grey, lateral
nTPM: 32.4
2140 Male, age 76, both hemispheres 41.9
2053 Male, age 18, unknown 33.0
2272 Male, age 74, both hemispheres 22.4
Pretectal area
nTPM: 28.0
2825 Male, age 18, unknown 35.0
2316 Male, age 76, right hemisphere 31.7
2224 Female, age 72, unknown 31.0
1816 Male, age 51, unknown 30.9
2407 Male, age 75, both hemispheres 30.3
2667 Female, age 75, unknown 26.4
1944 Female, age 72, unknown 26.3
2007 Male, age 72, unknown 25.5
2273 Male, age 74, both hemispheres 24.6
1815 Male, age 53, unknown 23.6
1817 Female, age 42, unknown 23.1
Red nucleus
nTPM: 21.0
2227 Male, age 72, unknown 25.3
2769 Male, age 72, unknown 25.1
2588 Male, age 74, left hemisphere 23.8
2503 Female, age 72, unknown 22.8
1954 Female, age 42, unknown 22.2
2725 Female, age 75, unknown 21.9
1821 Female, age 72, unknown 19.7
1904 Male, age 53, unknown 19.5
2584 Male, age 75, left hemisphere 19.1
2823 Male, age 76, right hemisphere 18.5
1865 Male, age 51, unknown 17.4
2785 Male, age 18, unknown 17.0
Substantia nigra
nTPM: 26.6
1916 Female, age 42, unknown 34.3
2699 Male, age 18, unknown 33.1
2665 Male, age 74, both hemispheres 29.9
1851 Male, age 51, unknown 27.7
2583 Male, age 75, right hemisphere 26.5
1889 Female, age 72, unknown 25.8
1941 Male, age 53, unknown 24.9
2590 Female, age 75, unknown 23.1
2241 Male, age 72, unknown 22.7
2409 Female, age 72, unknown 17.9
Superior colliculus
nTPM: 30.1
2664 Male, age 75, both hemispheres 52.3
2261 Male, age 18, unknown 36.8
1839 Male, age 51, unknown 33.2
1796 Male, age 53, unknown 32.7
1895 Male, age 76, right hemisphere 29.2
2668 Female, age 75, unknown 28.4
2087 Female, age 72, unknown 25.5
2587 Male, age 74, left hemisphere 23.1
1995 Male, age 72, unknown 21.0
1913 Female, age 42, unknown 18.4
Ventral tegmental area
nTPM: 25.7
1942 Male, age 51, unknown 30.7
1915 Female, age 42, unknown 29.3
2021 Male, age 53, unknown 25.8
2218 Male, age 76, both hemispheres 24.6
2410 Female, age 72, unknown 24.1
2223 Female, age 72, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.0
Samples: 139

Max nTPM: 14.1
Min nTPM: 0.2
Std nTPM: 2.4
Median nTPM: 4.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 10.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 10.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 10.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 9.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 9.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 9.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 9.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 9.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 8.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.0
FF:10158-103A5 76 years, female 6.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.5
Samples: 4

Max nTPM: 35.1
Min nTPM: 28.7
Sample A Female 35.1
Sample B Female 31.7
Sample C Male 34.3
Sample D Male 28.7
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 49.9
Min nTPM: 30.8
Sample A Female 49.9
Sample B Female 31.7
Sample C Male 35.8
Sample D Male 30.8
Periaqueductal gray
nTPM: 40.2
Samples: 3

Max nTPM: 44.3
Min nTPM: 34.1
Sample B Female 42.2
Sample C Male 44.3
Sample D Male 34.1
Superior colliculi
nTPM: 34.8
Samples: 4

Max nTPM: 41.4
Min nTPM: 30.6
Sample A Female 41.4
Sample B Female 32.7
Sample C Male 30.6
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.9
Sample A Male 5.5
Sample B Male 3.4
Sample C Female 2.9
Sample D Female 4.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
2168 Antisense, RP_Baylor_102792, Mouse strain C57BL/6J (56 days, male) 4.1
2167 Antisense, RP_Baylor_102792, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org