MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.0 nTPM
HPA Brain:4.2 nTPM
GTEx:31.0 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:97.4 nTPM
Mouse:39.2 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.8
2019 Male, age 18, unknown 4.4
1870 Female, age 42, unknown 3.3
2666 Male, age 74, left hemisphere 3.1
2219 Male, age 76, both hemispheres 2.9
1827 Male, age 72, unknown 2.7
2411 Female, age 72, unknown 2.7
2828 Female, age 72, unknown 2.5
1830 Male, age 51, unknown 2.4
1833 Male, age 53, unknown 2.3
2586 Male, age 75, left hemisphere 1.7
Dorsal raphe nucleus
nTPM: 3.9
2047 Male, age 72, unknown 5.1
1828 Male, age 53, unknown 4.8
2016 Female, age 72, unknown 3.5
2298 Female, age 72, unknown 3.3
2750 Male, age 76, both hemispheres 2.8
Inferior colliculus
nTPM: 2.7
2097 Female, age 72, unknown 3.1
1848 Female, age 42, unknown 2.8
1890 Male, age 53, unknown 2.5
2849 Male, age 72, unknown 2.3
Median raphe nucleus
nTPM: 3.6
2220 Male, age 76, midline 3.6
Periaquaductal grey, anterior
nTPM: 4.2
1947 Male, age 18, unknown 5.3
1795 Male, age 51, unknown 3.8
2502 Female, age 75, unknown 3.6
Periaquaductal grey, dorsal
nTPM: 2.8
2464 Female, age 72, unknown 3.3
2850 Male, age 76, both hemispheres 3.3
1840 Male, age 53, unknown 2.6
1831 Male, age 72, unknown 1.8
Periaquaductal grey, lateral
nTPM: 2.9
2272 Male, age 74, both hemispheres 3.7
2140 Male, age 76, both hemispheres 2.9
2053 Male, age 18, unknown 2.3
Pretectal area
nTPM: 3.9
1817 Female, age 42, unknown 5.7
2007 Male, age 72, unknown 5.6
1816 Male, age 51, unknown 4.8
2273 Male, age 74, both hemispheres 4.2
2667 Female, age 75, unknown 3.9
1944 Female, age 72, unknown 3.6
2224 Female, age 72, unknown 3.5
2407 Male, age 75, both hemispheres 3.2
1815 Male, age 53, unknown 3.0
2316 Male, age 76, right hemisphere 2.6
2825 Male, age 18, unknown 2.4
Red nucleus
nTPM: 2.6
2725 Female, age 75, unknown 4.0
1821 Female, age 72, unknown 3.9
2785 Male, age 18, unknown 3.1
1865 Male, age 51, unknown 2.7
2503 Female, age 72, unknown 2.4
2227 Male, age 72, unknown 2.3
1904 Male, age 53, unknown 2.2
2588 Male, age 74, left hemisphere 2.2
2584 Male, age 75, left hemisphere 2.1
2769 Male, age 72, unknown 2.1
2823 Male, age 76, right hemisphere 2.1
1954 Female, age 42, unknown 1.9
Substantia nigra
nTPM: 3.9
1916 Female, age 42, unknown 6.9
2241 Male, age 72, unknown 5.5
1941 Male, age 53, unknown 5.2
1889 Female, age 72, unknown 3.7
1851 Male, age 51, unknown 3.4
2590 Female, age 75, unknown 3.3
2583 Male, age 75, right hemisphere 3.0
2665 Male, age 74, both hemispheres 3.0
2699 Male, age 18, unknown 2.4
2409 Female, age 72, unknown 2.3
Superior colliculus
nTPM: 2.8
1796 Male, age 53, unknown 3.5
1895 Male, age 76, right hemisphere 3.5
2261 Male, age 18, unknown 3.2
2587 Male, age 74, left hemisphere 3.1
1839 Male, age 51, unknown 3.0
2087 Female, age 72, unknown 3.0
2664 Male, age 75, both hemispheres 2.5
1913 Female, age 42, unknown 2.1
2668 Female, age 75, unknown 2.1
1995 Male, age 72, unknown 1.8
Ventral tegmental area
nTPM: 3.3
1915 Female, age 42, unknown 4.5
2218 Male, age 76, both hemispheres 3.8
2223 Female, age 72, unknown 3.0
1942 Male, age 51, unknown 2.9
2410 Female, age 72, unknown 2.9
2021 Male, age 53, unknown 2.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.0
Samples: 139

Max nTPM: 61.3
Min nTPM: 17.4
Std nTPM: 6.7
Median nTPM: 29.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 61.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 47.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 44.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 44.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 43.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 43.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 42.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.6
Samples: 4

Max nTPM: 133.7
Min nTPM: 56.0
Sample A Female 133.7
Sample B Female 89.9
Sample C Male 106.8
Sample D Male 56.0
Midbrain
nTPM: 97.4
Samples: 4

Max nTPM: 111.3
Min nTPM: 84.8
Sample A Female 84.8
Sample B Female 111.3
Sample C Male 105.7
Sample D Male 87.7
Periaqueductal gray
nTPM: 89.2
Samples: 3

Max nTPM: 99.3
Min nTPM: 82.0
Sample B Female 86.2
Sample C Male 99.3
Sample D Male 82.0
Superior colliculi
nTPM: 94.5
Samples: 4

Max nTPM: 111.0
Min nTPM: 76.8
Sample A Female 104.4
Sample B Female 76.8
Sample C Male 111.0
Sample D Male 85.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 41.0
Sample C Female 39.7
Sample D Female 40.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
71789921 Antisense, RP_050926_02_C10, Mouse strain C57BL/6J (56 days, male) 8.5

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