MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA Brain:55.5 nTPM
GTEx:11.5 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:28.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.4
1830 Male, age 51, unknown 59.5
2019 Male, age 18, unknown 53.6
2411 Female, age 72, unknown 53.5
1833 Male, age 53, unknown 50.6
1870 Female, age 42, unknown 48.6
2666 Male, age 74, left hemisphere 41.1
2828 Female, age 72, unknown 41.0
2586 Male, age 75, left hemisphere 36.0
2219 Male, age 76, both hemispheres 35.5
1827 Male, age 72, unknown 34.5
Dorsal raphe nucleus
nTPM: 35.6
2750 Male, age 76, both hemispheres 57.6
2016 Female, age 72, unknown 36.5
1828 Male, age 53, unknown 34.2
2047 Male, age 72, unknown 29.5
2298 Female, age 72, unknown 20.1
Inferior colliculus
nTPM: 28.5
1890 Male, age 53, unknown 31.7
2849 Male, age 72, unknown 30.5
1848 Female, age 42, unknown 29.6
2097 Female, age 72, unknown 22.2
Median raphe nucleus
nTPM: 38.5
2220 Male, age 76, midline 38.5
Periaquaductal grey, anterior
nTPM: 29.0
2502 Female, age 75, unknown 30.7
1947 Male, age 18, unknown 29.0
1795 Male, age 51, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 28.0
2464 Female, age 72, unknown 37.0
1831 Male, age 72, unknown 32.6
1840 Male, age 53, unknown 21.4
2850 Male, age 76, both hemispheres 21.2
Periaquaductal grey, lateral
nTPM: 29.2
2053 Male, age 18, unknown 32.7
2272 Male, age 74, both hemispheres 31.0
2140 Male, age 76, both hemispheres 24.0
Pretectal area
nTPM: 30.8
2316 Male, age 76, right hemisphere 41.5
2407 Male, age 75, both hemispheres 40.1
2273 Male, age 74, both hemispheres 38.6
1815 Male, age 53, unknown 33.2
2667 Female, age 75, unknown 32.5
2825 Male, age 18, unknown 31.9
2007 Male, age 72, unknown 28.8
2224 Female, age 72, unknown 26.7
1817 Female, age 42, unknown 25.7
1944 Female, age 72, unknown 25.0
1816 Male, age 51, unknown 15.4
Red nucleus
nTPM: 55.5
1865 Male, age 51, unknown 72.0
2823 Male, age 76, right hemisphere 70.1
2769 Male, age 72, unknown 58.8
2785 Male, age 18, unknown 58.4
2588 Male, age 74, left hemisphere 57.8
2227 Male, age 72, unknown 55.6
1904 Male, age 53, unknown 55.0
2503 Female, age 72, unknown 54.7
2584 Male, age 75, left hemisphere 48.2
1954 Female, age 42, unknown 47.6
1821 Female, age 72, unknown 47.5
2725 Female, age 75, unknown 39.8
Substantia nigra
nTPM: 34.0
2583 Male, age 75, right hemisphere 47.3
2409 Female, age 72, unknown 39.2
1851 Male, age 51, unknown 38.3
2699 Male, age 18, unknown 35.3
2590 Female, age 75, unknown 34.4
1941 Male, age 53, unknown 33.5
2241 Male, age 72, unknown 30.2
1889 Female, age 72, unknown 29.6
2665 Male, age 74, both hemispheres 27.0
1916 Female, age 42, unknown 25.3
Superior colliculus
nTPM: 37.8
1913 Female, age 42, unknown 65.5
1995 Male, age 72, unknown 43.8
2587 Male, age 74, left hemisphere 43.8
2668 Female, age 75, unknown 42.3
1839 Male, age 51, unknown 36.7
1895 Male, age 76, right hemisphere 35.8
1796 Male, age 53, unknown 31.0
2087 Female, age 72, unknown 28.4
2664 Male, age 75, both hemispheres 28.1
2261 Male, age 18, unknown 22.2
Ventral tegmental area
nTPM: 42.0
2223 Female, age 72, unknown 55.8
2410 Female, age 72, unknown 47.0
2021 Male, age 53, unknown 42.2
1942 Male, age 51, unknown 40.8
2218 Male, age 76, both hemispheres 38.4
1915 Female, age 42, unknown 27.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.5
Samples: 139

Max nTPM: 31.3
Min nTPM: 3.3
Std nTPM: 5.1
Median nTPM: 10.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 27.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 26.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 23.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 22.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 19.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 19.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 19.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.4
Samples: 4

Max nTPM: 50.3
Min nTPM: 22.0
Sample A Female 35.0
Sample B Female 22.0
Sample C Male 26.2
Sample D Male 50.3
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 73.6
Min nTPM: 19.6
Sample A Female 73.6
Sample B Female 33.0
Sample C Male 19.6
Sample D Male 22.2
Periaqueductal gray
nTPM: 22.9
Samples: 3

Max nTPM: 29.0
Min nTPM: 17.3
Sample B Female 29.0
Sample C Male 17.3
Sample D Male 22.3
Superior colliculi
nTPM: 28.6
Samples: 4

Max nTPM: 34.2
Min nTPM: 18.4
Sample A Female 33.3
Sample B Female 18.4
Sample C Male 28.4
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 30.5
Min nTPM: 27.3
Sample A Male 30.1
Sample B Male 27.3
Sample C Female 27.3
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68797510 Antisense, RP_050210_02_D04, Mouse strain C57BL/6J (56 days, male) 0.4

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