MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:31.2 nTPM
GTEx:14.1 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:18.6 nTPM
Mouse:7.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
2828 Female, age 72, unknown 29.4
2666 Male, age 74, left hemisphere 28.9
2586 Male, age 75, left hemisphere 28.4
2411 Female, age 72, unknown 24.3
1870 Female, age 42, unknown 23.4
1827 Male, age 72, unknown 23.1
1833 Male, age 53, unknown 21.0
1830 Male, age 51, unknown 20.0
2019 Male, age 18, unknown 16.1
2219 Male, age 76, both hemispheres 14.6
Dorsal raphe nucleus
nTPM: 31.2
1828 Male, age 53, unknown 38.1
2047 Male, age 72, unknown 36.9
2016 Female, age 72, unknown 32.7
2298 Female, age 72, unknown 29.0
2750 Male, age 76, both hemispheres 19.3
Inferior colliculus
nTPM: 23.5
1848 Female, age 42, unknown 26.9
2097 Female, age 72, unknown 22.7
2849 Male, age 72, unknown 22.6
1890 Male, age 53, unknown 21.9
Median raphe nucleus
nTPM: 15.1
2220 Male, age 76, midline 15.1
Periaquaductal grey, anterior
nTPM: 24.8
1795 Male, age 51, unknown 28.1
1947 Male, age 18, unknown 25.5
2502 Female, age 75, unknown 20.8
Periaquaductal grey, dorsal
nTPM: 24.6
1840 Male, age 53, unknown 27.2
2464 Female, age 72, unknown 26.7
2850 Male, age 76, both hemispheres 22.8
1831 Male, age 72, unknown 21.9
Periaquaductal grey, lateral
nTPM: 30.4
2053 Male, age 18, unknown 35.6
2140 Male, age 76, both hemispheres 31.5
2272 Male, age 74, both hemispheres 24.0
Pretectal area
nTPM: 23.6
2825 Male, age 18, unknown 30.5
2316 Male, age 76, right hemisphere 30.0
2667 Female, age 75, unknown 28.2
2273 Male, age 74, both hemispheres 26.5
2224 Female, age 72, unknown 24.5
1944 Female, age 72, unknown 24.1
1816 Male, age 51, unknown 21.3
1817 Female, age 42, unknown 19.8
2007 Male, age 72, unknown 19.5
2407 Male, age 75, both hemispheres 17.6
1815 Male, age 53, unknown 17.1
Red nucleus
nTPM: 23.9
2769 Male, age 72, unknown 29.1
2725 Female, age 75, unknown 28.6
2588 Male, age 74, left hemisphere 28.5
2227 Male, age 72, unknown 28.1
1954 Female, age 42, unknown 27.2
1821 Female, age 72, unknown 23.3
2823 Male, age 76, right hemisphere 22.8
1865 Male, age 51, unknown 21.6
1904 Male, age 53, unknown 21.5
2503 Female, age 72, unknown 21.4
2584 Male, age 75, left hemisphere 18.7
2785 Male, age 18, unknown 16.0
Substantia nigra
nTPM: 23.6
2583 Male, age 75, right hemisphere 27.0
2699 Male, age 18, unknown 26.1
1916 Female, age 42, unknown 24.9
2409 Female, age 72, unknown 24.9
1941 Male, age 53, unknown 24.0
2590 Female, age 75, unknown 23.9
2665 Male, age 74, both hemispheres 23.6
1851 Male, age 51, unknown 23.2
1889 Female, age 72, unknown 20.5
2241 Male, age 72, unknown 18.1
Superior colliculus
nTPM: 22.0
1839 Male, age 51, unknown 25.1
1796 Male, age 53, unknown 25.0
2261 Male, age 18, unknown 24.6
2087 Female, age 72, unknown 24.3
1913 Female, age 42, unknown 21.3
2587 Male, age 74, left hemisphere 21.1
1995 Male, age 72, unknown 20.9
2664 Male, age 75, both hemispheres 20.7
1895 Male, age 76, right hemisphere 20.0
2668 Female, age 75, unknown 17.1
Ventral tegmental area
nTPM: 21.3
1915 Female, age 42, unknown 24.9
2410 Female, age 72, unknown 23.5
2021 Male, age 53, unknown 21.8
1942 Male, age 51, unknown 21.6
2223 Female, age 72, unknown 19.3
2218 Male, age 76, both hemispheres 16.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 43.7
Min nTPM: 2.0
Std nTPM: 7.4
Median nTPM: 12.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 43.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 43.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 36.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 33.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 31.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 27.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 27.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 26.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 25.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 25.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.6
Samples: 4

Max nTPM: 24.1
Min nTPM: 11.5
Sample A Female 21.2
Sample B Female 17.4
Sample C Male 24.1
Sample D Male 11.5
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 24.7
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 14.5
Sample C Male 24.7
Sample D Male 18.0
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 16.3
Min nTPM: 11.9
Sample B Female 11.9
Sample C Male 16.3
Sample D Male 12.1
Superior colliculi
nTPM: 16.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.9
Sample A Female 16.7
Sample B Female 13.9
Sample C Male 18.2
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.3
Sample A Male 8.2
Sample B Male 6.3
Sample C Female 7.2
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69735580 Antisense, RP_050503_03_B01, Mouse strain C57BL/6J (56 days, male) 0.6
73520991 Antisense, RP_051101_02_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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