MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:30.8 nTPM
GTEx:22.3 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:18.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.8
1870 Female, age 42, unknown 25.4
1830 Male, age 51, unknown 23.3
2411 Female, age 72, unknown 22.3
1827 Male, age 72, unknown 22.1
1833 Male, age 53, unknown 21.8
2219 Male, age 76, both hemispheres 21.3
2666 Male, age 74, left hemisphere 21.2
2019 Male, age 18, unknown 19.9
2828 Female, age 72, unknown 17.3
2586 Male, age 75, left hemisphere 13.2
Dorsal raphe nucleus
nTPM: 23.9
2047 Male, age 72, unknown 25.9
2016 Female, age 72, unknown 25.3
2750 Male, age 76, both hemispheres 23.3
1828 Male, age 53, unknown 22.9
2298 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 24.9
2849 Male, age 72, unknown 27.7
2097 Female, age 72, unknown 26.3
1890 Male, age 53, unknown 23.3
1848 Female, age 42, unknown 22.5
Median raphe nucleus
nTPM: 30.8
2220 Male, age 76, midline 30.8
Periaquaductal grey, anterior
nTPM: 20.2
1947 Male, age 18, unknown 24.8
1795 Male, age 51, unknown 19.3
2502 Female, age 75, unknown 16.4
Periaquaductal grey, dorsal
nTPM: 24.8
2850 Male, age 76, both hemispheres 28.8
1831 Male, age 72, unknown 24.2
2464 Female, age 72, unknown 24.2
1840 Male, age 53, unknown 21.8
Periaquaductal grey, lateral
nTPM: 23.3
2272 Male, age 74, both hemispheres 23.8
2140 Male, age 76, both hemispheres 23.7
2053 Male, age 18, unknown 22.3
Pretectal area
nTPM: 23.1
2224 Female, age 72, unknown 27.9
2825 Male, age 18, unknown 26.8
1944 Female, age 72, unknown 24.5
2316 Male, age 76, right hemisphere 23.5
2667 Female, age 75, unknown 23.1
1815 Male, age 53, unknown 22.5
2273 Male, age 74, both hemispheres 22.3
1817 Female, age 42, unknown 22.2
1816 Male, age 51, unknown 22.0
2007 Male, age 72, unknown 19.9
2407 Male, age 75, both hemispheres 19.2
Red nucleus
nTPM: 20.5
1954 Female, age 42, unknown 24.2
2725 Female, age 75, unknown 24.0
1821 Female, age 72, unknown 22.0
2588 Male, age 74, left hemisphere 21.5
1865 Male, age 51, unknown 20.5
2503 Female, age 72, unknown 20.5
2823 Male, age 76, right hemisphere 20.4
1904 Male, age 53, unknown 19.4
2227 Male, age 72, unknown 19.3
2769 Male, age 72, unknown 18.5
2785 Male, age 18, unknown 18.5
2584 Male, age 75, left hemisphere 17.5
Substantia nigra
nTPM: 23.5
1889 Female, age 72, unknown 27.4
2241 Male, age 72, unknown 27.1
2590 Female, age 75, unknown 26.9
1941 Male, age 53, unknown 25.1
2583 Male, age 75, right hemisphere 23.4
2409 Female, age 72, unknown 23.0
2665 Male, age 74, both hemispheres 21.7
1851 Male, age 51, unknown 20.7
1916 Female, age 42, unknown 20.4
2699 Male, age 18, unknown 19.2
Superior colliculus
nTPM: 20.3
1895 Male, age 76, right hemisphere 25.6
1796 Male, age 53, unknown 23.0
1839 Male, age 51, unknown 21.2
2087 Female, age 72, unknown 21.0
2261 Male, age 18, unknown 19.8
2587 Male, age 74, left hemisphere 19.3
1913 Female, age 42, unknown 19.2
1995 Male, age 72, unknown 18.1
2668 Female, age 75, unknown 17.9
2664 Male, age 75, both hemispheres 17.3
Ventral tegmental area
nTPM: 22.7
2218 Male, age 76, both hemispheres 24.8
2021 Male, age 53, unknown 23.3
2223 Female, age 72, unknown 23.1
1915 Female, age 42, unknown 22.9
1942 Male, age 51, unknown 22.8
2410 Female, age 72, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 139

Max nTPM: 34.1
Min nTPM: 12.6
Std nTPM: 3.5
Median nTPM: 22.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 34.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 30.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 29.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 29.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 29.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 28.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 27.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 27.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 27.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 36.2
Min nTPM: 21.6
Sample A Female 36.2
Sample B Female 22.4
Sample C Male 26.0
Sample D Male 21.6
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 33.3
Min nTPM: 24.0
Sample A Female 33.3
Sample B Female 27.7
Sample C Male 24.0
Sample D Male 25.9
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 31.0
Min nTPM: 22.3
Sample B Female 22.3
Sample C Male 31.0
Sample D Male 25.7
Superior colliculi
nTPM: 27.5
Samples: 4

Max nTPM: 35.1
Min nTPM: 23.8
Sample A Female 35.1
Sample B Female 23.8
Sample C Male 25.8
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.8
Sample A Male 17.8
Sample B Male 18.1
Sample C Female 20.5
Sample D Female 18.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68269052 Antisense, RP_041208_01_G03, Mouse strain C57BL/6J (56 days, male) 0.7

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