MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:16.3 nTPM
GTEx:12.3 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:67.9 nTPM
Mouse:14.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.1
1827 Male, age 72, unknown 14.7
1870 Female, age 42, unknown 14.3
2411 Female, age 72, unknown 13.8
2828 Female, age 72, unknown 13.6
2219 Male, age 76, both hemispheres 13.5
2019 Male, age 18, unknown 13.4
2666 Male, age 74, left hemisphere 12.9
1833 Male, age 53, unknown 12.8
1830 Male, age 51, unknown 11.9
2586 Male, age 75, left hemisphere 9.8
Dorsal raphe nucleus
nTPM: 14.3
2298 Female, age 72, unknown 15.3
2750 Male, age 76, both hemispheres 15.3
1828 Male, age 53, unknown 14.6
2047 Male, age 72, unknown 14.2
2016 Female, age 72, unknown 11.9
Inferior colliculus
nTPM: 12.9
1890 Male, age 53, unknown 14.0
2097 Female, age 72, unknown 13.7
1848 Female, age 42, unknown 12.8
2849 Male, age 72, unknown 11.2
Median raphe nucleus
nTPM: 16.3
2220 Male, age 76, midline 16.3
Periaquaductal grey, anterior
nTPM: 15.3
1947 Male, age 18, unknown 17.2
2502 Female, age 75, unknown 14.8
1795 Male, age 51, unknown 14.0
Periaquaductal grey, dorsal
nTPM: 12.1
1831 Male, age 72, unknown 12.5
2850 Male, age 76, both hemispheres 12.1
2464 Female, age 72, unknown 11.9
1840 Male, age 53, unknown 11.7
Periaquaductal grey, lateral
nTPM: 12.8
2272 Male, age 74, both hemispheres 13.9
2053 Male, age 18, unknown 13.3
2140 Male, age 76, both hemispheres 11.1
Pretectal area
nTPM: 13.5
1817 Female, age 42, unknown 16.1
1816 Male, age 51, unknown 15.6
1944 Female, age 72, unknown 14.9
2007 Male, age 72, unknown 14.5
1815 Male, age 53, unknown 14.2
2224 Female, age 72, unknown 13.5
2825 Male, age 18, unknown 12.8
2407 Male, age 75, both hemispheres 12.4
2273 Male, age 74, both hemispheres 12.2
2667 Female, age 75, unknown 11.5
2316 Male, age 76, right hemisphere 10.9
Red nucleus
nTPM: 13.4
1821 Female, age 72, unknown 17.0
2725 Female, age 75, unknown 14.2
1954 Female, age 42, unknown 14.1
1904 Male, age 53, unknown 13.8
1865 Male, age 51, unknown 13.6
2769 Male, age 72, unknown 13.3
2823 Male, age 76, right hemisphere 13.0
2785 Male, age 18, unknown 12.9
2227 Male, age 72, unknown 12.7
2588 Male, age 74, left hemisphere 12.5
2503 Female, age 72, unknown 11.6
2584 Male, age 75, left hemisphere 11.5
Substantia nigra
nTPM: 15.4
2409 Female, age 72, unknown 19.8
2241 Male, age 72, unknown 16.5
1916 Female, age 42, unknown 15.9
1889 Female, age 72, unknown 15.8
1851 Male, age 51, unknown 15.6
1941 Male, age 53, unknown 15.3
2665 Male, age 74, both hemispheres 14.9
2590 Female, age 75, unknown 14.2
2583 Male, age 75, right hemisphere 13.3
2699 Male, age 18, unknown 12.5
Superior colliculus
nTPM: 13.4
2668 Female, age 75, unknown 16.0
2587 Male, age 74, left hemisphere 14.8
1895 Male, age 76, right hemisphere 14.4
2261 Male, age 18, unknown 14.3
1839 Male, age 51, unknown 13.3
2087 Female, age 72, unknown 13.2
1796 Male, age 53, unknown 12.3
1913 Female, age 42, unknown 12.3
1995 Male, age 72, unknown 11.7
2664 Male, age 75, both hemispheres 11.2
Ventral tegmental area
nTPM: 14.6
2218 Male, age 76, both hemispheres 16.3
2410 Female, age 72, unknown 15.4
1915 Female, age 42, unknown 14.7
1942 Male, age 51, unknown 14.4
2223 Female, age 72, unknown 13.6
2021 Male, age 53, unknown 13.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 24.3
Min nTPM: 6.8
Std nTPM: 2.7
Median nTPM: 11.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 21.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 17.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 16.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 16.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.9
Samples: 4

Max nTPM: 72.9
Min nTPM: 55.3
Sample A Female 72.9
Sample B Female 55.3
Sample C Male 57.6
Sample D Male 57.9
Midbrain
nTPM: 61.6
Samples: 4

Max nTPM: 72.5
Min nTPM: 56.0
Sample A Female 72.5
Sample B Female 61.7
Sample C Male 56.3
Sample D Male 56.0
Periaqueductal gray
nTPM: 54.8
Samples: 3

Max nTPM: 58.1
Min nTPM: 51.2
Sample B Female 55.0
Sample C Male 58.1
Sample D Male 51.2
Superior colliculi
nTPM: 68.0
Samples: 4

Max nTPM: 83.2
Min nTPM: 53.9
Sample A Female 83.2
Sample B Female 53.9
Sample C Male 69.9
Sample D Male 64.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.3
Sample A Male 12.3
Sample B Male 14.4
Sample C Female 17.3
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
413816 Antisense, RP_040809_01_G01, Mouse strain C57BL/6J (56 days, male) 0.2

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