MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:260.4 nTPM
HPA Brain:193.3 nTPM
GTEx:260.4 nTPM
FANTOM5:220.8 Scaled Tags Per Million
Pig:307.0 nTPM
Mouse:229.9 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 193.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 178.5
2586 Male, age 75, left hemisphere 201.7
2019 Male, age 18, unknown 196.8
1870 Female, age 42, unknown 196.7
2666 Male, age 74, left hemisphere 194.8
2411 Female, age 72, unknown 180.6
1833 Male, age 53, unknown 174.3
1830 Male, age 51, unknown 172.7
2828 Female, age 72, unknown 167.3
1827 Male, age 72, unknown 157.8
2219 Male, age 76, both hemispheres 142.0
Dorsal raphe nucleus
nTPM: 169.7
2750 Male, age 76, both hemispheres 202.0
2016 Female, age 72, unknown 172.0
2047 Male, age 72, unknown 169.1
2298 Female, age 72, unknown 154.4
1828 Male, age 53, unknown 151.1
Inferior colliculus
nTPM: 155.1
1890 Male, age 53, unknown 165.1
2097 Female, age 72, unknown 161.9
1848 Female, age 42, unknown 150.6
2849 Male, age 72, unknown 142.8
Median raphe nucleus
nTPM: 145.7
2220 Male, age 76, midline 145.7
Periaquaductal grey, anterior
nTPM: 173.5
1947 Male, age 18, unknown 181.7
2502 Female, age 75, unknown 181.0
1795 Male, age 51, unknown 157.7
Periaquaductal grey, dorsal
nTPM: 143.7
2464 Female, age 72, unknown 152.5
2850 Male, age 76, both hemispheres 143.1
1840 Male, age 53, unknown 143.0
1831 Male, age 72, unknown 136.1
Periaquaductal grey, lateral
nTPM: 158.0
2272 Male, age 74, both hemispheres 166.2
2140 Male, age 76, both hemispheres 160.4
2053 Male, age 18, unknown 147.3
Pretectal area
nTPM: 167.1
2007 Male, age 72, unknown 202.3
1815 Male, age 53, unknown 188.9
1817 Female, age 42, unknown 187.1
1944 Female, age 72, unknown 178.5
1816 Male, age 51, unknown 172.8
2316 Male, age 76, right hemisphere 172.5
2224 Female, age 72, unknown 165.2
2273 Male, age 74, both hemispheres 162.8
2825 Male, age 18, unknown 142.4
2407 Male, age 75, both hemispheres 139.6
2667 Female, age 75, unknown 126.1
Red nucleus
nTPM: 193.3
2503 Female, age 72, unknown 218.3
2785 Male, age 18, unknown 214.8
2588 Male, age 74, left hemisphere 211.0
2769 Male, age 72, unknown 205.6
2227 Male, age 72, unknown 202.3
1904 Male, age 53, unknown 195.6
1821 Female, age 72, unknown 194.6
1865 Male, age 51, unknown 191.0
1954 Female, age 42, unknown 184.8
2725 Female, age 75, unknown 182.1
2584 Male, age 75, left hemisphere 161.9
2823 Male, age 76, right hemisphere 157.4
Substantia nigra
nTPM: 175.6
2590 Female, age 75, unknown 198.8
1916 Female, age 42, unknown 185.6
1851 Male, age 51, unknown 183.4
1941 Male, age 53, unknown 183.1
2665 Male, age 74, both hemispheres 180.2
1889 Female, age 72, unknown 176.0
2409 Female, age 72, unknown 170.0
2241 Male, age 72, unknown 166.2
2583 Male, age 75, right hemisphere 157.5
2699 Male, age 18, unknown 155.3
Superior colliculus
nTPM: 168.0
2668 Female, age 75, unknown 195.1
1913 Female, age 42, unknown 191.3
2587 Male, age 74, left hemisphere 190.0
2261 Male, age 18, unknown 180.4
1995 Male, age 72, unknown 164.4
1839 Male, age 51, unknown 164.1
1796 Male, age 53, unknown 157.1
2087 Female, age 72, unknown 149.3
1895 Male, age 76, right hemisphere 147.1
2664 Male, age 75, both hemispheres 141.1
Ventral tegmental area
nTPM: 174.3
2410 Female, age 72, unknown 184.9
1942 Male, age 51, unknown 183.9
2223 Female, age 72, unknown 183.5
1915 Female, age 42, unknown 172.0
2021 Male, age 53, unknown 163.3
2218 Male, age 76, both hemispheres 158.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 260.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 260.4
Samples: 139

Max nTPM: 552.5
Min nTPM: 156.1
Std nTPM: 72.1
Median nTPM: 252.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 552.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 478.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 458.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 433.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 423.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 396.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 383.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 383.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 381.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 380.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 374.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 220.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.8
FF:10158-103A5 76 years, female 220.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 307.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 286.6
Samples: 4

Max nTPM: 325.4
Min nTPM: 247.9
Sample A Female 325.4
Sample B Female 247.9
Sample C Male 258.7
Sample D Male 314.2
Midbrain
nTPM: 307.1
Samples: 4

Max nTPM: 469.7
Min nTPM: 224.0
Sample A Female 469.7
Sample B Female 264.9
Sample C Male 269.6
Sample D Male 224.0
Periaqueductal gray
nTPM: 239.2
Samples: 3

Max nTPM: 258.7
Min nTPM: 221.6
Sample B Female 237.3
Sample C Male 258.7
Sample D Male 221.6
Superior colliculi
nTPM: 269.0
Samples: 4

Max nTPM: 293.9
Min nTPM: 243.2
Sample A Female 293.9
Sample B Female 243.2
Sample C Male 268.2
Sample D Male 270.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 229.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 229.9
Samples: 4

Max nTPM: 239.5
Min nTPM: 221.7
Sample A Male 221.7
Sample B Male 225.0
Sample C Female 239.5
Sample D Female 233.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
68191504 Antisense, RP_041129_01_C10, Mouse strain C57BL/6J (56 days, male) 10.1

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