MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA Brain:28.4 nTPM
GTEx:27.2 nTPM
FANTOM5:109.3 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:25.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2019 Male, age 18, unknown 31.7
1870 Female, age 42, unknown 29.6
2411 Female, age 72, unknown 27.6
1833 Male, age 53, unknown 26.5
1830 Male, age 51, unknown 26.3
1827 Male, age 72, unknown 24.8
2828 Female, age 72, unknown 23.2
2586 Male, age 75, left hemisphere 22.9
2666 Male, age 74, left hemisphere 21.5
2219 Male, age 76, both hemispheres 19.3
Dorsal raphe nucleus
nTPM: 28.0
2298 Female, age 72, unknown 31.2
2750 Male, age 76, both hemispheres 29.0
1828 Male, age 53, unknown 27.0
2016 Female, age 72, unknown 26.7
2047 Male, age 72, unknown 26.1
Inferior colliculus
nTPM: 25.1
2097 Female, age 72, unknown 30.0
1890 Male, age 53, unknown 24.9
1848 Female, age 42, unknown 24.0
2849 Male, age 72, unknown 21.6
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 31.1
1947 Male, age 18, unknown 26.6
1795 Male, age 51, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 27.0
2850 Male, age 76, both hemispheres 29.5
1831 Male, age 72, unknown 27.2
2464 Female, age 72, unknown 26.0
1840 Male, age 53, unknown 25.2
Periaquaductal grey, lateral
nTPM: 25.8
2140 Male, age 76, both hemispheres 26.7
2272 Male, age 74, both hemispheres 26.6
2053 Male, age 18, unknown 24.2
Pretectal area
nTPM: 27.4
2273 Male, age 74, both hemispheres 31.6
1815 Male, age 53, unknown 30.4
1817 Female, age 42, unknown 29.9
2007 Male, age 72, unknown 28.8
1944 Female, age 72, unknown 28.7
2224 Female, age 72, unknown 28.1
2316 Male, age 76, right hemisphere 27.6
1816 Male, age 51, unknown 27.1
2667 Female, age 75, unknown 24.6
2825 Male, age 18, unknown 24.3
2407 Male, age 75, both hemispheres 20.8
Red nucleus
nTPM: 27.8
1821 Female, age 72, unknown 33.8
1904 Male, age 53, unknown 31.2
1954 Female, age 42, unknown 31.1
1865 Male, age 51, unknown 30.1
2785 Male, age 18, unknown 28.0
2725 Female, age 75, unknown 27.8
2823 Male, age 76, right hemisphere 27.5
2227 Male, age 72, unknown 26.6
2503 Female, age 72, unknown 26.6
2769 Male, age 72, unknown 26.1
2588 Male, age 74, left hemisphere 22.7
2584 Male, age 75, left hemisphere 21.8
Substantia nigra
nTPM: 26.3
2409 Female, age 72, unknown 30.0
2241 Male, age 72, unknown 29.7
1889 Female, age 72, unknown 28.3
1851 Male, age 51, unknown 27.4
1941 Male, age 53, unknown 26.4
1916 Female, age 42, unknown 25.8
2665 Male, age 74, both hemispheres 25.5
2590 Female, age 75, unknown 24.4
2583 Male, age 75, right hemisphere 23.4
2699 Male, age 18, unknown 22.3
Superior colliculus
nTPM: 26.1
1995 Male, age 72, unknown 29.4
2261 Male, age 18, unknown 28.8
1913 Female, age 42, unknown 28.6
2087 Female, age 72, unknown 27.8
2668 Female, age 75, unknown 26.6
1895 Male, age 76, right hemisphere 26.5
2587 Male, age 74, left hemisphere 26.0
1839 Male, age 51, unknown 25.4
1796 Male, age 53, unknown 22.2
2664 Male, age 75, both hemispheres 19.8
Ventral tegmental area
nTPM: 25.3
2410 Female, age 72, unknown 28.6
1915 Female, age 42, unknown 24.9
1942 Male, age 51, unknown 24.8
2218 Male, age 76, both hemispheres 24.8
2223 Female, age 72, unknown 24.5
2021 Male, age 53, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.2
Samples: 139

Max nTPM: 44.5
Min nTPM: 18.7
Std nTPM: 4.6
Median nTPM: 26.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 44.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 38.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 37.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 37.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 37.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 36.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 36.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 36.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 35.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.3
FF:10158-103A5 76 years, female 109.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.0
Samples: 4

Max nTPM: 41.4
Min nTPM: 32.5
Sample A Female 41.4
Sample B Female 38.1
Sample C Male 35.9
Sample D Male 32.5
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 46.7
Min nTPM: 26.6
Sample A Female 46.7
Sample B Female 33.6
Sample C Male 38.4
Sample D Male 26.6
Periaqueductal gray
nTPM: 31.8
Samples: 3

Max nTPM: 33.3
Min nTPM: 29.9
Sample B Female 29.9
Sample C Male 32.2
Sample D Male 33.3
Superior colliculi
nTPM: 39.7
Samples: 4

Max nTPM: 44.1
Min nTPM: 33.7
Sample A Female 41.1
Sample B Female 44.1
Sample C Male 39.7
Sample D Male 33.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.1
Sample A Male 26.3
Sample B Male 24.6
Sample C Female 23.1
Sample D Female 26.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
79536685 Antisense, RP_071018_01_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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