HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA Brain:55.0 nTPM
GTEx:11.4 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:91.7 nTPM
Mouse:139.4 nTPM
Allen mouse:2.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 55.0
Sample id Sample description nTPM
Hippocampus
nTPM: 49.9
2148 Female, age 91, left hemisphere 60.5
2529 Female, age 94, left hemisphere 55.2
2621 Female, age 67, right hemisphere 49.7
1855 Male, age 76, left hemisphere 49.1
1911 Female, age 85, right hemisphere 44.4
1898 Male, age 80, left hemisphere 40.6
Dentate gyrus
nTPM: 46.5
2531 Female, age 67, both hemispheres 62.6
2246 Female, age 85, both hemispheres 52.2
2528 Male, age 74, both hemispheres 47.5
1927 Female, age 91, both hemispheres 44.6
2530 Female, age 94, left hemisphere 42.8
2010 Male, age 76, both hemispheres 29.3
Entorhinal gyrus
nTPM: 42.5
2686 Male, age 75, right hemisphere 60.2
2117 Female, age 91, right hemisphere 50.4
1938 Female, age 85, left hemisphere 45.2
1787 Male, age 76, left hemisphere 34.0
2764 Male, age 80, right hemisphere 32.9
2613 Female, age 94, left hemisphere 32.0
Hippocampus, CA1
nTPM: 48.8
2045 Male, age 76, both hemispheres 70.4
2527 Male, age 74, both hemispheres 56.2
1873 Female, age 85, both hemispheres 52.8
2749 Male, age 80, left hemisphere 33.5
2082 Female, age 91, right hemisphere 31.3
Hippocampus, CA2
nTPM: 40.9
1892 Male, age 76, both hemispheres 47.9
1963 Male, age 80, left hemisphere 44.8
2437 Female, age 94, left hemisphere 42.2
2113 Female, age 91, right hemisphere 41.2
1940 Female, age 85, left hemisphere 36.2
2249 Male, age 74, both hemispheres 32.9
Hippocampus, CA3
nTPM: 55.0
2861 Female, age 67, both hemispheres 78.9
2620 Female, age 94, left hemisphere 75.3
1867 Male, age 76, both hemispheres 56.1
1891 Female, age 85, both hemispheres 45.0
2137 Male, age 80, left hemisphere 39.1
2436 Male, age 74, both hemispheres 36.0
Parahippocampal cortex
nTPM: 37.2
2692 Male, age 74, both hemispheres 52.9
1933 Female, age 85, both hemispheres 47.9
2622 Female, age 67, right hemisphere 46.6
2245 Female, age 91, both hemispheres 38.5
2250 Female, age 67, right hemisphere 38.3
2693 Female, age 94, both hemispheres 33.7
1990 Female, age 91, right hemisphere 31.5
2018 Male, age 76, both hemispheres 29.1
1850 Male, age 80, both hemispheres 28.2
2532 Female, age 72, left hemisphere 25.1
Perirhinal gyrus
nTPM: 31.0
1794 Male, age 80, right hemisphere 35.4
1847 Female, age 91, left hemisphere 32.5
2848 Male, age 76, right hemisphere 32.5
2521 Female, age 94, right hemisphere 28.8
1841 Female, age 85, right hemisphere 25.9
Subiculum
nTPM: 38.6
2729 Female, age 91, right hemisphere 58.2
2619 Male, age 74, both hemispheres 46.4
1977 Female, age 85, both hemispheres 33.8
2438 Female, age 94, left hemisphere 32.8
2042 Male, age 76, both hemispheres 30.8
1901 Male, age 80, both hemispheres 29.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.4
Samples: 197

Max nTPM: 38.5
Min nTPM: 1.4
Std nTPM: 6.8
Median nTPM: 10.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 38.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 37.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 36.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 35.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 31.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 31.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 25.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 25.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 25.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 24.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 23.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.9
FF:10169-103B7 60 years, female 21.8
FF:10153-102I9 76 years, female 16.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 91.7
Pig sample Sample description nTPM
Subiculum
nTPM: 82.2
Samples: 4

Max nTPM: 108.0
Min nTPM: 69.0
Sample A Female 108.0
Sample B Female 73.9
Sample C Male 69.0
Sample D Male 78.0
Dorsal hippocampus
nTPM: 67.7
Samples: 4

Max nTPM: 77.4
Min nTPM: 57.2
Sample A Female 77.4
Sample B Female 66.1
Sample C Male 57.2
Sample D Male 70.0
Entorhinal cortex
nTPM: 91.7
Samples: 4

Max nTPM: 96.6
Min nTPM: 84.1
Sample A Female 94.4
Sample B Female 91.8
Sample C Male 96.6
Sample D Male 84.1
Ventral hippocampus
nTPM: 75.0
Samples: 4

Max nTPM: 90.0
Min nTPM: 67.5
Sample A Female 67.5
Sample B Female 68.9
Sample C Male 90.0
Sample D Male 73.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 139.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 121.2
Samples: 4

Max nTPM: 136.5
Min nTPM: 102.1
Sample A Male 116.4
Sample B Male 102.1
Sample C Female 136.5
Sample D Female 129.9
Hippocampal formation
nTPM: 139.4
Samples: 4

Max nTPM: 157.4
Min nTPM: 130.8
Sample A Male 157.4
Sample B Male 130.8
Sample C Female 131.2
Sample D Female 138.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.1
74562206 Antisense, RP_060208_02_D10, Mouse strain C57BL/6J (56 days, male) 2.6
74822814 Antisense, RP_050921_01_C08, Mouse strain C57BL/6J (56 days, male) 1.6

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