MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:291.0 nTPM
HPA Brain:443.7 nTPM
GTEx:291.0 nTPM
FANTOM5:1088.4 Scaled Tags Per Million
Pig:493.9 nTPM
Mouse:124.5 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 443.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 306.8
1870 Female, age 42, unknown 443.1
1830 Male, age 51, unknown 425.8
1833 Male, age 53, unknown 382.8
2411 Female, age 72, unknown 365.4
2019 Male, age 18, unknown 346.3
2219 Male, age 76, both hemispheres 277.5
2828 Female, age 72, unknown 247.7
2666 Male, age 74, left hemisphere 228.4
1827 Male, age 72, unknown 188.6
2586 Male, age 75, left hemisphere 162.2
Dorsal raphe nucleus
nTPM: 229.1
2750 Male, age 76, both hemispheres 522.5
2016 Female, age 72, unknown 231.0
1828 Male, age 53, unknown 203.6
2047 Male, age 72, unknown 102.4
2298 Female, age 72, unknown 86.3
Inferior colliculus
nTPM: 190.0
2849 Male, age 72, unknown 214.0
1890 Male, age 53, unknown 201.1
1848 Female, age 42, unknown 198.9
2097 Female, age 72, unknown 146.0
Median raphe nucleus
nTPM: 263.8
2220 Male, age 76, midline 263.8
Periaquaductal grey, anterior
nTPM: 159.5
2502 Female, age 75, unknown 214.6
1947 Male, age 18, unknown 160.3
1795 Male, age 51, unknown 103.7
Periaquaductal grey, dorsal
nTPM: 120.7
2464 Female, age 72, unknown 193.3
1831 Male, age 72, unknown 138.3
2850 Male, age 76, both hemispheres 83.6
1840 Male, age 53, unknown 67.8
Periaquaductal grey, lateral
nTPM: 126.1
2053 Male, age 18, unknown 165.1
2272 Male, age 74, both hemispheres 139.2
2140 Male, age 76, both hemispheres 74.1
Pretectal area
nTPM: 176.1
2316 Male, age 76, right hemisphere 279.4
1815 Male, age 53, unknown 275.0
2407 Male, age 75, both hemispheres 224.8
1817 Female, age 42, unknown 197.4
2007 Male, age 72, unknown 192.3
2825 Male, age 18, unknown 179.9
2224 Female, age 72, unknown 133.4
2273 Male, age 74, both hemispheres 131.2
1944 Female, age 72, unknown 116.7
2667 Female, age 75, unknown 112.4
1816 Male, age 51, unknown 94.3
Red nucleus
nTPM: 443.7
1865 Male, age 51, unknown 654.0
1821 Female, age 72, unknown 560.5
2823 Male, age 76, right hemisphere 546.6
1904 Male, age 53, unknown 521.4
2503 Female, age 72, unknown 464.4
1954 Female, age 42, unknown 443.1
2227 Male, age 72, unknown 424.3
2769 Male, age 72, unknown 420.3
2785 Male, age 18, unknown 408.3
2725 Female, age 75, unknown 351.0
2588 Male, age 74, left hemisphere 300.1
2584 Male, age 75, left hemisphere 229.8
Substantia nigra
nTPM: 231.8
2409 Female, age 72, unknown 330.8
1851 Male, age 51, unknown 262.5
2699 Male, age 18, unknown 261.2
1889 Female, age 72, unknown 259.9
2241 Male, age 72, unknown 241.3
2590 Female, age 75, unknown 240.1
2583 Male, age 75, right hemisphere 214.2
1941 Male, age 53, unknown 190.7
1916 Female, age 42, unknown 160.9
2665 Male, age 74, both hemispheres 156.6
Superior colliculus
nTPM: 247.7
1913 Female, age 42, unknown 398.9
1995 Male, age 72, unknown 369.4
1895 Male, age 76, right hemisphere 333.6
2587 Male, age 74, left hemisphere 286.6
2668 Female, age 75, unknown 272.4
1839 Male, age 51, unknown 267.7
1796 Male, age 53, unknown 166.8
2664 Male, age 75, both hemispheres 136.4
2087 Female, age 72, unknown 135.2
2261 Male, age 18, unknown 109.6
Ventral tegmental area
nTPM: 273.9
2223 Female, age 72, unknown 450.8
2410 Female, age 72, unknown 282.4
2218 Male, age 76, both hemispheres 267.4
2021 Male, age 53, unknown 221.1
1942 Male, age 51, unknown 221.0
1915 Female, age 42, unknown 200.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 291.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 291.0
Samples: 139

Max nTPM: 915.4
Min nTPM: 61.8
Std nTPM: 161.6
Median nTPM: 260.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 915.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 846.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 823.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 639.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 636.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 635.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 628.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 615.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 606.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 551.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 543.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1088.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1088.4
FF:10158-103A5 76 years, female 1088.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 493.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 388.6
Samples: 4

Max nTPM: 656.2
Min nTPM: 222.2
Sample A Female 402.5
Sample B Female 222.2
Sample C Male 273.5
Sample D Male 656.2
Midbrain
nTPM: 493.8
Samples: 4

Max nTPM: 1093.4
Min nTPM: 195.3
Sample A Female 1093.4
Sample B Female 466.3
Sample C Male 195.3
Sample D Male 220.3
Periaqueductal gray
nTPM: 269.1
Samples: 3

Max nTPM: 315.6
Min nTPM: 179.6
Sample B Female 315.6
Sample C Male 179.6
Sample D Male 312.1
Superior colliculi
nTPM: 323.4
Samples: 4

Max nTPM: 421.8
Min nTPM: 163.1
Sample A Female 377.0
Sample B Female 163.1
Sample C Male 331.6
Sample D Male 421.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 124.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.5
Samples: 4

Max nTPM: 131.8
Min nTPM: 115.4
Sample A Male 115.4
Sample B Male 121.4
Sample C Female 131.8
Sample D Female 129.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
69448632 Antisense, RP_050419_02_F04, Mouse strain C57BL/6J (56 days, male) 10.0

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