MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:20.4 nTPM
GTEx:8.0 nTPM
FANTOM5:40.8 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:25.9 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
2219 Male, age 76, both hemispheres 18.6
1827 Male, age 72, unknown 17.8
2411 Female, age 72, unknown 17.4
2666 Male, age 74, left hemisphere 16.8
1833 Male, age 53, unknown 16.2
2019 Male, age 18, unknown 16.1
1870 Female, age 42, unknown 15.3
2586 Male, age 75, left hemisphere 14.8
2828 Female, age 72, unknown 14.8
1830 Male, age 51, unknown 13.6
Dorsal raphe nucleus
nTPM: 17.0
2047 Male, age 72, unknown 17.9
2298 Female, age 72, unknown 17.8
2016 Female, age 72, unknown 16.9
1828 Male, age 53, unknown 16.8
2750 Male, age 76, both hemispheres 15.5
Inferior colliculus
nTPM: 18.1
2849 Male, age 72, unknown 20.0
1890 Male, age 53, unknown 17.7
2097 Female, age 72, unknown 17.7
1848 Female, age 42, unknown 17.1
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Periaquaductal grey, anterior
nTPM: 19.3
2502 Female, age 75, unknown 21.5
1947 Male, age 18, unknown 18.5
1795 Male, age 51, unknown 17.9
Periaquaductal grey, dorsal
nTPM: 17.4
2850 Male, age 76, both hemispheres 19.1
1840 Male, age 53, unknown 18.0
1831 Male, age 72, unknown 16.7
2464 Female, age 72, unknown 15.6
Periaquaductal grey, lateral
nTPM: 16.9
2053 Male, age 18, unknown 18.9
2140 Male, age 76, both hemispheres 17.8
2272 Male, age 74, both hemispheres 13.8
Pretectal area
nTPM: 18.0
1816 Male, age 51, unknown 20.4
1817 Female, age 42, unknown 20.4
1815 Male, age 53, unknown 19.8
2224 Female, age 72, unknown 19.7
2667 Female, age 75, unknown 19.4
2007 Male, age 72, unknown 18.8
1944 Female, age 72, unknown 16.6
2825 Male, age 18, unknown 16.4
2316 Male, age 76, right hemisphere 16.0
2273 Male, age 74, both hemispheres 15.8
2407 Male, age 75, both hemispheres 15.0
Red nucleus
nTPM: 15.6
1821 Female, age 72, unknown 18.5
1904 Male, age 53, unknown 17.2
2588 Male, age 74, left hemisphere 17.1
2725 Female, age 75, unknown 16.5
2769 Male, age 72, unknown 15.8
2227 Male, age 72, unknown 15.6
1954 Female, age 42, unknown 15.4
2503 Female, age 72, unknown 15.4
1865 Male, age 51, unknown 15.3
2823 Male, age 76, right hemisphere 14.1
2584 Male, age 75, left hemisphere 13.7
2785 Male, age 18, unknown 13.2
Substantia nigra
nTPM: 20.4
1916 Female, age 42, unknown 27.4
2409 Female, age 72, unknown 25.8
1851 Male, age 51, unknown 22.0
2699 Male, age 18, unknown 21.7
1889 Female, age 72, unknown 20.5
2241 Male, age 72, unknown 18.6
2665 Male, age 74, both hemispheres 18.5
2590 Female, age 75, unknown 16.6
2583 Male, age 75, right hemisphere 16.5
1941 Male, age 53, unknown 15.8
Superior colliculus
nTPM: 16.9
1839 Male, age 51, unknown 19.3
2087 Female, age 72, unknown 18.9
2261 Male, age 18, unknown 18.4
1895 Male, age 76, right hemisphere 18.1
1796 Male, age 53, unknown 18.0
2664 Male, age 75, both hemispheres 17.3
2587 Male, age 74, left hemisphere 15.8
2668 Female, age 75, unknown 15.8
1913 Female, age 42, unknown 14.1
1995 Male, age 72, unknown 13.6
Ventral tegmental area
nTPM: 16.9
1915 Female, age 42, unknown 20.1
2410 Female, age 72, unknown 18.4
2218 Male, age 76, both hemispheres 17.7
2021 Male, age 53, unknown 16.0
1942 Male, age 51, unknown 15.1
2223 Female, age 72, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 15.0
Min nTPM: 4.0
Std nTPM: 1.9
Median nTPM: 7.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 15.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 12.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 12.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 12.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 11.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 11.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 11.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 11.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 11.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.8
FF:10158-103A5 76 years, female 40.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.6
Samples: 4

Max nTPM: 43.7
Min nTPM: 32.2
Sample A Female 38.3
Sample B Female 36.2
Sample C Male 43.7
Sample D Male 32.2
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 43.0
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 38.5
Sample C Male 41.7
Sample D Male 43.0
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 38.8
Min nTPM: 34.6
Sample B Female 35.6
Sample C Male 38.8
Sample D Male 34.6
Superior colliculi
nTPM: 36.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 33.7
Sample A Female 35.5
Sample B Female 33.7
Sample C Male 42.3
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 27.1
Min nTPM: 24.1
Sample A Male 24.1
Sample B Male 26.9
Sample C Female 27.1
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
513015 Antisense, RP_040810_01_A06, Mouse strain C57BL/6J (56 days, male) 1.9

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