MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:161.6 nTPM
HPA Brain:77.3 nTPM
GTEx:161.6 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:104.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.4
1870 Female, age 42, unknown 63.9
2019 Male, age 18, unknown 62.8
2411 Female, age 72, unknown 62.1
1827 Male, age 72, unknown 59.0
2828 Female, age 72, unknown 55.4
2219 Male, age 76, both hemispheres 46.7
1833 Male, age 53, unknown 46.5
1830 Male, age 51, unknown 46.1
2666 Male, age 74, left hemisphere 43.1
2586 Male, age 75, left hemisphere 38.0
Dorsal raphe nucleus
nTPM: 62.8
2298 Female, age 72, unknown 85.4
2047 Male, age 72, unknown 60.1
2750 Male, age 76, both hemispheres 59.6
1828 Male, age 53, unknown 56.9
2016 Female, age 72, unknown 52.0
Inferior colliculus
nTPM: 49.2
2097 Female, age 72, unknown 64.8
1890 Male, age 53, unknown 47.3
1848 Female, age 42, unknown 46.6
2849 Male, age 72, unknown 38.3
Median raphe nucleus
nTPM: 64.1
2220 Male, age 76, midline 64.1
Periaquaductal grey, anterior
nTPM: 66.5
2502 Female, age 75, unknown 70.2
1947 Male, age 18, unknown 67.0
1795 Male, age 51, unknown 62.3
Periaquaductal grey, dorsal
nTPM: 51.9
2850 Male, age 76, both hemispheres 56.4
1840 Male, age 53, unknown 53.1
1831 Male, age 72, unknown 49.6
2464 Female, age 72, unknown 48.4
Periaquaductal grey, lateral
nTPM: 57.1
2272 Male, age 74, both hemispheres 63.6
2053 Male, age 18, unknown 60.9
2140 Male, age 76, both hemispheres 46.7
Pretectal area
nTPM: 64.1
1816 Male, age 51, unknown 86.1
2007 Male, age 72, unknown 72.5
1817 Female, age 42, unknown 70.8
1944 Female, age 72, unknown 70.7
2273 Male, age 74, both hemispheres 67.9
2224 Female, age 72, unknown 67.8
1815 Male, age 53, unknown 66.8
2667 Female, age 75, unknown 51.8
2825 Male, age 18, unknown 50.9
2407 Male, age 75, both hemispheres 50.2
2316 Male, age 76, right hemisphere 50.0
Red nucleus
nTPM: 54.8
1821 Female, age 72, unknown 73.1
2725 Female, age 75, unknown 71.9
2823 Male, age 76, right hemisphere 59.1
1954 Female, age 42, unknown 57.1
1865 Male, age 51, unknown 54.8
2503 Female, age 72, unknown 54.3
1904 Male, age 53, unknown 53.1
2227 Male, age 72, unknown 52.1
2769 Male, age 72, unknown 48.4
2785 Male, age 18, unknown 47.0
2584 Male, age 75, left hemisphere 45.7
2588 Male, age 74, left hemisphere 40.6
Substantia nigra
nTPM: 77.3
1941 Male, age 53, unknown 108.0
2241 Male, age 72, unknown 99.3
1916 Female, age 42, unknown 95.7
1851 Male, age 51, unknown 90.2
1889 Female, age 72, unknown 75.8
2409 Female, age 72, unknown 69.4
2665 Male, age 74, both hemispheres 64.8
2699 Male, age 18, unknown 62.1
2590 Female, age 75, unknown 58.4
2583 Male, age 75, right hemisphere 49.1
Superior colliculus
nTPM: 57.1
2261 Male, age 18, unknown 73.4
2587 Male, age 74, left hemisphere 64.0
2668 Female, age 75, unknown 63.0
2087 Female, age 72, unknown 60.0
1895 Male, age 76, right hemisphere 57.7
1796 Male, age 53, unknown 55.3
1913 Female, age 42, unknown 55.3
1995 Male, age 72, unknown 50.8
2664 Male, age 75, both hemispheres 48.8
1839 Male, age 51, unknown 42.2
Ventral tegmental area
nTPM: 66.8
1915 Female, age 42, unknown 76.5
2410 Female, age 72, unknown 76.3
2218 Male, age 76, both hemispheres 67.2
1942 Male, age 51, unknown 63.4
2223 Female, age 72, unknown 63.1
2021 Male, age 53, unknown 54.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.6
Samples: 139

Max nTPM: 389.2
Min nTPM: 100.1
Std nTPM: 42.1
Median nTPM: 153.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 389.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 297.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 280.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 279.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 263.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 252.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 246.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 235.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 234.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 226.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 223.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.0
FF:10158-103A5 76 years, female 77.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.2
Samples: 4

Max nTPM: 115.7
Min nTPM: 92.8
Sample A Male 115.7
Sample B Male 100.4
Sample C Female 92.8
Sample D Female 108.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
73573289 Antisense, RP_051121_03_F10, Mouse strain C57BL/6J (56 days, male) 0.7

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