MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:22.5 nTPM
GTEx:8.4 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:33.1 nTPM
Mouse:24.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
1870 Female, age 42, unknown 24.0
1830 Male, age 51, unknown 22.6
2828 Female, age 72, unknown 21.7
1833 Male, age 53, unknown 21.4
2411 Female, age 72, unknown 20.8
2019 Male, age 18, unknown 20.6
2219 Male, age 76, both hemispheres 19.7
1827 Male, age 72, unknown 18.5
2666 Male, age 74, left hemisphere 18.3
2586 Male, age 75, left hemisphere 15.9
Dorsal raphe nucleus
nTPM: 19.3
2750 Male, age 76, both hemispheres 21.2
2047 Male, age 72, unknown 19.7
2016 Female, age 72, unknown 19.4
1828 Male, age 53, unknown 18.2
2298 Female, age 72, unknown 18.1
Inferior colliculus
nTPM: 19.7
1890 Male, age 53, unknown 20.7
2097 Female, age 72, unknown 20.7
1848 Female, age 42, unknown 19.2
2849 Male, age 72, unknown 18.1
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 18.1
1947 Male, age 18, unknown 20.6
2502 Female, age 75, unknown 18.7
1795 Male, age 51, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 19.1
2464 Female, age 72, unknown 20.1
1831 Male, age 72, unknown 20.0
2850 Male, age 76, both hemispheres 19.0
1840 Male, age 53, unknown 17.2
Periaquaductal grey, lateral
nTPM: 17.6
2140 Male, age 76, both hemispheres 19.0
2272 Male, age 74, both hemispheres 17.3
2053 Male, age 18, unknown 16.7
Pretectal area
nTPM: 19.1
2316 Male, age 76, right hemisphere 24.7
2825 Male, age 18, unknown 20.8
2667 Female, age 75, unknown 20.4
2407 Male, age 75, both hemispheres 19.1
1815 Male, age 53, unknown 18.6
1944 Female, age 72, unknown 18.6
2224 Female, age 72, unknown 18.4
2007 Male, age 72, unknown 17.6
2273 Male, age 74, both hemispheres 17.6
1816 Male, age 51, unknown 17.4
1817 Female, age 42, unknown 16.8
Red nucleus
nTPM: 22.5
1865 Male, age 51, unknown 26.1
2503 Female, age 72, unknown 25.7
1954 Female, age 42, unknown 25.6
1821 Female, age 72, unknown 25.0
2823 Male, age 76, right hemisphere 24.8
1904 Male, age 53, unknown 24.4
2769 Male, age 72, unknown 21.8
2227 Male, age 72, unknown 21.4
2588 Male, age 74, left hemisphere 20.9
2785 Male, age 18, unknown 19.1
2725 Female, age 75, unknown 18.8
2584 Male, age 75, left hemisphere 16.1
Substantia nigra
nTPM: 20.2
1941 Male, age 53, unknown 24.5
1916 Female, age 42, unknown 23.7
2241 Male, age 72, unknown 23.7
2699 Male, age 18, unknown 23.6
1851 Male, age 51, unknown 20.5
2590 Female, age 75, unknown 19.2
1889 Female, age 72, unknown 17.3
2665 Male, age 74, both hemispheres 17.2
2583 Male, age 75, right hemisphere 17.0
2409 Female, age 72, unknown 15.6
Superior colliculus
nTPM: 19.2
1895 Male, age 76, right hemisphere 22.2
1913 Female, age 42, unknown 22.1
2668 Female, age 75, unknown 21.0
2587 Male, age 74, left hemisphere 20.8
1995 Male, age 72, unknown 20.3
1796 Male, age 53, unknown 18.3
1839 Male, age 51, unknown 18.3
2664 Male, age 75, both hemispheres 17.2
2087 Female, age 72, unknown 16.4
2261 Male, age 18, unknown 15.5
Ventral tegmental area
nTPM: 20.0
2223 Female, age 72, unknown 22.9
1915 Female, age 42, unknown 21.0
1942 Male, age 51, unknown 20.1
2218 Male, age 76, both hemispheres 20.0
2410 Female, age 72, unknown 19.7
2021 Male, age 53, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 13.1
Min nTPM: 4.2
Std nTPM: 1.5
Median nTPM: 8.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 13.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 12.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 12.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 12.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 11.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 11.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 11.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 10.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.4
FF:10158-103A5 76 years, female 40.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 33.7
Min nTPM: 24.4
Sample A Female 33.6
Sample B Female 24.4
Sample C Male 31.3
Sample D Male 33.7
Midbrain
nTPM: 33.1
Samples: 4

Max nTPM: 46.1
Min nTPM: 28.2
Sample A Female 46.1
Sample B Female 29.0
Sample C Male 28.2
Sample D Male 29.2
Periaqueductal gray
nTPM: 28.4
Samples: 3

Max nTPM: 29.0
Min nTPM: 27.6
Sample B Female 28.5
Sample C Male 29.0
Sample D Male 27.6
Superior colliculi
nTPM: 31.4
Samples: 4

Max nTPM: 34.3
Min nTPM: 28.2
Sample A Female 34.3
Sample B Female 28.2
Sample C Male 30.2
Sample D Male 32.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 27.0
Min nTPM: 23.4
Sample A Male 24.6
Sample B Male 24.0
Sample C Female 27.0
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
324213 Antisense, RP_040617_01_E08, Mouse strain C57BL/6J (56 days, male) 0.4
76081926 Antisense, RP_060626_01_A06, Mouse strain C57BL/6J (56 days, male) 0.3

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