HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:68.5 nTPM
HPA Brain:36.8 nTPM
GTEx:68.5 nTPM
FANTOM5:68.4 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:86.2 nTPM
Allen mouse:16.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022013
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Hippocampus
nTPM: 29.0
1898 Male, age 80, left hemisphere 46.2
1855 Male, age 76, left hemisphere 30.2
2621 Female, age 67, right hemisphere 26.7
2529 Female, age 94, left hemisphere 25.1
2148 Female, age 91, left hemisphere 24.1
1911 Female, age 85, right hemisphere 21.7
Dentate gyrus
nTPM: 28.3
1927 Female, age 91, both hemispheres 36.0
2010 Male, age 76, both hemispheres 32.6
2530 Female, age 94, left hemisphere 30.3
2531 Female, age 67, both hemispheres 25.8
2246 Female, age 85, both hemispheres 25.3
2528 Male, age 74, both hemispheres 19.6
Entorhinal gyrus
nTPM: 26.5
2764 Male, age 80, right hemisphere 33.0
1938 Female, age 85, left hemisphere 28.2
1787 Male, age 76, left hemisphere 27.5
2613 Female, age 94, left hemisphere 25.2
2686 Male, age 75, right hemisphere 24.9
2117 Female, age 91, right hemisphere 20.1
Hippocampus, CA1
nTPM: 36.8
2749 Male, age 80, left hemisphere 68.3
2045 Male, age 76, both hemispheres 32.6
1873 Female, age 85, both hemispheres 32.4
2527 Male, age 74, both hemispheres 26.3
2082 Female, age 91, right hemisphere 24.2
Hippocampus, CA2
nTPM: 31.1
1892 Male, age 76, both hemispheres 45.6
1963 Male, age 80, left hemisphere 42.8
2437 Female, age 94, left hemisphere 27.7
1940 Female, age 85, left hemisphere 26.1
2113 Female, age 91, right hemisphere 22.6
2249 Male, age 74, both hemispheres 21.6
Hippocampus, CA3
nTPM: 33.1
2137 Male, age 80, left hemisphere 55.9
1867 Male, age 76, both hemispheres 42.3
2436 Male, age 74, both hemispheres 26.7
2620 Female, age 94, left hemisphere 26.1
1891 Female, age 85, both hemispheres 24.5
2861 Female, age 67, both hemispheres 23.1
Parahippocampal cortex
nTPM: 28.3
1850 Male, age 80, both hemispheres 40.3
2245 Female, age 91, both hemispheres 34.0
1933 Female, age 85, both hemispheres 31.9
2250 Female, age 67, right hemisphere 30.1
2532 Female, age 72, left hemisphere 27.6
1990 Female, age 91, right hemisphere 27.3
2018 Male, age 76, both hemispheres 26.9
2693 Female, age 94, both hemispheres 23.2
2622 Female, age 67, right hemisphere 22.5
2692 Male, age 74, both hemispheres 18.9
Perirhinal gyrus
nTPM: 36.0
1847 Female, age 91, left hemisphere 42.4
1794 Male, age 80, right hemisphere 39.4
1841 Female, age 85, right hemisphere 38.4
2521 Female, age 94, right hemisphere 33.4
2848 Male, age 76, right hemisphere 26.3
Subiculum
nTPM: 26.8
1901 Male, age 80, both hemispheres 36.0
1977 Female, age 85, both hemispheres 31.6
2042 Male, age 76, both hemispheres 27.7
2438 Female, age 94, left hemisphere 24.9
2619 Male, age 74, both hemispheres 21.5
2729 Female, age 91, right hemisphere 18.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.5
Samples: 197

Max nTPM: 175.6
Min nTPM: 24.0
Std nTPM: 27.3
Median nTPM: 62.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 175.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 156.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 149.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 147.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 136.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 136.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 132.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 131.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 129.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 119.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 117.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.4
FF:10169-103B7 60 years, female 76.8
FF:10153-102I9 76 years, female 60.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Subiculum
nTPM: 15.6
Samples: 4

Max nTPM: 21.3
Min nTPM: 13.2
Sample A Female 21.3
Sample B Female 13.7
Sample C Male 13.2
Sample D Male 14.3
Dorsal hippocampus
nTPM: 18.7
Samples: 4

Max nTPM: 25.7
Min nTPM: 14.5
Sample A Female 25.7
Sample B Female 18.0
Sample C Male 16.6
Sample D Male 14.5
Entorhinal cortex
nTPM: 17.0
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.2
Sample A Female 19.5
Sample B Female 20.9
Sample C Male 14.4
Sample D Male 13.2
Ventral hippocampus
nTPM: 16.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 12.0
Sample A Female 17.9
Sample B Female 12.0
Sample C Male 16.1
Sample D Male 20.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 84.7
Samples: 4

Max nTPM: 92.5
Min nTPM: 78.3
Sample A Male 78.3
Sample B Male 92.5
Sample C Female 88.1
Sample D Female 79.7
Hippocampal formation
nTPM: 86.2
Samples: 4

Max nTPM: 98.4
Min nTPM: 77.3
Sample A Male 98.4
Sample B Male 86.8
Sample C Female 77.3
Sample D Female 82.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.0
70543029 Antisense, RP_050329_01_G03, Mouse strain C57BL/6J (56 days, male) 16.0

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