MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.9 nTPM
HPA Brain:75.2 nTPM
GTEx:62.9 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:51.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
2586 Male, age 75, left hemisphere 49.4
2828 Female, age 72, unknown 48.5
1827 Male, age 72, unknown 41.2
1870 Female, age 42, unknown 40.8
2411 Female, age 72, unknown 33.9
1833 Male, age 53, unknown 32.9
1830 Male, age 51, unknown 26.9
2219 Male, age 76, both hemispheres 25.1
2666 Male, age 74, left hemisphere 23.5
2019 Male, age 18, unknown 17.6
Dorsal raphe nucleus
nTPM: 54.7
2016 Female, age 72, unknown 81.7
2298 Female, age 72, unknown 65.0
1828 Male, age 53, unknown 60.1
2047 Male, age 72, unknown 45.0
2750 Male, age 76, both hemispheres 21.7
Inferior colliculus
nTPM: 39.7
1848 Female, age 42, unknown 49.7
2849 Male, age 72, unknown 43.7
2097 Female, age 72, unknown 37.0
1890 Male, age 53, unknown 28.4
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 47.8
1795 Male, age 51, unknown 60.2
2502 Female, age 75, unknown 41.7
1947 Male, age 18, unknown 41.5
Periaquaductal grey, dorsal
nTPM: 54.7
1840 Male, age 53, unknown 67.4
2850 Male, age 76, both hemispheres 54.6
1831 Male, age 72, unknown 52.3
2464 Female, age 72, unknown 44.6
Periaquaductal grey, lateral
nTPM: 75.2
2272 Male, age 74, both hemispheres 86.1
2053 Male, age 18, unknown 83.5
2140 Male, age 76, both hemispheres 56.1
Pretectal area
nTPM: 47.3
2273 Male, age 74, both hemispheres 103.6
2224 Female, age 72, unknown 68.5
2667 Female, age 75, unknown 60.8
2825 Male, age 18, unknown 55.7
1944 Female, age 72, unknown 46.4
2316 Male, age 76, right hemisphere 42.2
1816 Male, age 51, unknown 40.3
2407 Male, age 75, both hemispheres 32.3
1815 Male, age 53, unknown 31.1
1817 Female, age 42, unknown 22.9
2007 Male, age 72, unknown 16.0
Red nucleus
nTPM: 26.0
2503 Female, age 72, unknown 35.1
2227 Male, age 72, unknown 33.7
2725 Female, age 75, unknown 33.4
2769 Male, age 72, unknown 32.5
1821 Female, age 72, unknown 30.5
1954 Female, age 42, unknown 28.6
1904 Male, age 53, unknown 23.3
2823 Male, age 76, right hemisphere 22.6
1865 Male, age 51, unknown 19.9
2588 Male, age 74, left hemisphere 18.9
2584 Male, age 75, left hemisphere 18.6
2785 Male, age 18, unknown 15.5
Substantia nigra
nTPM: 44.7
2699 Male, age 18, unknown 77.1
1916 Female, age 42, unknown 59.3
1851 Male, age 51, unknown 46.2
2409 Female, age 72, unknown 46.0
2241 Male, age 72, unknown 42.9
2590 Female, age 75, unknown 39.8
2665 Male, age 74, both hemispheres 37.2
1941 Male, age 53, unknown 35.5
2583 Male, age 75, right hemisphere 33.2
1889 Female, age 72, unknown 30.2
Superior colliculus
nTPM: 43.6
1995 Male, age 72, unknown 52.2
2261 Male, age 18, unknown 52.2
1796 Male, age 53, unknown 51.8
2664 Male, age 75, both hemispheres 50.0
2587 Male, age 74, left hemisphere 46.9
1839 Male, age 51, unknown 46.5
2087 Female, age 72, unknown 44.2
1913 Female, age 42, unknown 33.4
1895 Male, age 76, right hemisphere 32.1
2668 Female, age 75, unknown 27.1
Ventral tegmental area
nTPM: 41.1
1915 Female, age 42, unknown 57.1
2021 Male, age 53, unknown 51.8
1942 Male, age 51, unknown 41.7
2410 Female, age 72, unknown 40.4
2218 Male, age 76, both hemispheres 29.6
2223 Female, age 72, unknown 25.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.9
Samples: 139

Max nTPM: 310.1
Min nTPM: 8.2
Std nTPM: 42.9
Median nTPM: 53.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 310.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 225.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 196.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 168.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 154.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 152.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 148.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 146.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 144.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 135.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 134.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 26.0
Min nTPM: 9.4
Sample A Female 26.0
Sample B Female 14.2
Sample C Male 22.9
Sample D Male 9.4
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 38.2
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 16.0
Sample C Male 38.2
Sample D Male 25.4
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 15.1
Min nTPM: 11.1
Sample B Female 13.1
Sample C Male 15.1
Sample D Male 11.1
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 42.8
Min nTPM: 16.8
Sample A Female 25.7
Sample B Female 16.8
Sample C Male 42.8
Sample D Male 22.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.3
Samples: 4

Max nTPM: 52.5
Min nTPM: 49.8
Sample A Male 52.5
Sample B Male 49.8
Sample C Female 50.8
Sample D Female 51.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
76081883 Antisense, RP_060608_04_C09, Mouse strain C57BL/6J (56 days, male) 0.3
74581368 Antisense, RP_050921_02_F05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org